MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis
☆43Feb 6, 2026Updated 5 months ago
Alternatives and similar repositories for MetaflowX
Users that are interested in MetaflowX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathogenfinder2☆18Apr 20, 2026Updated 3 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆26Updated this week
- ☆27Jan 30, 2025Updated last year
- ☆12Dec 22, 2025Updated 7 months ago
- Nextflow pipeline for the analysis of metagenomic short reads.☆24Jul 3, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆37Jul 21, 2025Updated last year
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Mar 19, 2026Updated 4 months ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆31Jun 22, 2026Updated last month
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆24Jun 25, 2026Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 8 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆48Jun 19, 2026Updated last month
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 6 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆53Jul 10, 2026Updated 2 weeks ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Updated this week
- The binning tool with dynamic contrastive learning and deep language model☆25Nov 14, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical bi…☆18Sep 1, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆26Nov 3, 2025Updated 8 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated last month
- ☆20Jan 13, 2026Updated 6 months ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆19Jul 17, 2026Updated last week
- ☆27May 17, 2026Updated 2 months ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 9 months ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- An efficient tool for large-scale correlation network analysis☆15Dec 27, 2024Updated last year
- Code repository accompanying the manuscript, Symbiont loss and gain, rather than co-diversification shapes honeybee gut microbiota divers…☆15Feb 21, 2025Updated last year
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated last month
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Updated this week
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 12 years ago
- Assembly and binning of metagenomes☆309Updated this week