MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis
☆30Feb 6, 2026Updated 3 weeks ago
Alternatives and similar repositories for MetaflowX
Users that are interested in MetaflowX are comparing it to the libraries listed below
Sorting:
- ☆10Dec 22, 2025Updated 2 months ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 5 years ago
- A snakemake workflow for metagenomic projects☆15Feb 16, 2023Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- ☆19Dec 4, 2025Updated 3 months ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Jun 14, 2025Updated 8 months ago
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 6 years ago
- ☆26Jun 26, 2025Updated 8 months ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Feb 3, 2020Updated 6 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆34Updated this week
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Feb 11, 2026Updated 3 weeks ago
- ☆10May 14, 2025Updated 9 months ago
- Pipeline for computing OTU tables from 16S or ITS amplicon sequencing data.☆33Jun 18, 2023Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- ☆14Feb 20, 2026Updated last week
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 3 months ago
- 科研通签到脚本 每日北京时间7点40,21点40，两个时间点自动签到☆25Sep 2, 2025Updated 6 months ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 5 months ago
- rcookbook☆10Oct 14, 2016Updated 9 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- ☆11Apr 5, 2021Updated 4 years ago
- Repeat-injection-based quality control, batch correction, exploration, & data cleaning.☆11Updated this week
- KiwiSDR: BeagleBone web-accessible shortwave receiver and software-defined GPS☆10Mar 6, 2023Updated 2 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago