BU-ISCIII / SARS-Cov2_analysisLinks
Documentation for analyzing SARS-Cov2 samples.
☆11Updated 5 years ago
Alternatives and similar repositories for SARS-Cov2_analysis
Users that are interested in SARS-Cov2_analysis are comparing it to the libraries listed below
Sorting:
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 5 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated 3 weeks ago
- Intra-species bacterial contamination detection☆25Updated 10 months ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16Updated 6 months ago
- ☆30Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆15Updated 3 years ago
- ☆26Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Read contamination removal☆25Updated last year
- Systematic ProtEin AnnotatoR☆19Updated 2 months ago
- ☆18Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year