BU-ISCIII / SARS-Cov2_analysisLinks
Documentation for analyzing SARS-Cov2 samples.
☆11Updated 5 years ago
Alternatives and similar repositories for SARS-Cov2_analysis
Users that are interested in SARS-Cov2_analysis are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Read contamination removal☆25Updated last year
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago
- ☆26Updated 5 years ago
- ☆12Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago