BU-ISCIII / SARS-Cov2_analysis
Documentation for analyzing SARS-Cov2 samples.
☆11Updated 4 years ago
Related projects: ⓘ
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Strain Prediction and Analysis with Representative SEquence☆18Updated this week
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 4 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 7 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆14Updated last month
- Influenza genome analysis Nextflow workflow☆14Updated last month
- ☆26Updated this week
- ☆13Updated this week
- Interactive, web tool for exploring pan-genome of bacterial strains☆43Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 2 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆20Updated 7 years ago
- Output FASTQ summary statistics in JSON format☆29Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated 10 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- workflows for offline analysis of 16S rRNA Nanopore data☆10Updated last year
- OPAL: Open-community Profiling Assessment tooL☆26Updated last month
- Find Unique genomic Regions☆29Updated 2 weeks ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- SARs-CoV-2 Primer schemes☆14Updated last year