meglecz / mkCOInrView external linksLinks
Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options
☆16May 26, 2025Updated 8 months ago
Alternatives and similar repositories for mkCOInr
Users that are interested in mkCOInr are comparing it to the libraries listed below
Sorting:
- Distance denoise by Entropy☆15Oct 17, 2025Updated 3 months ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- ☆14Updated this week
- ☆22Feb 23, 2023Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 8 years ago
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 3 months ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 6 months ago
- ☆19Apr 25, 2023Updated 2 years ago
- ☆19Dec 4, 2025Updated 2 months ago
- Demo repository for creating a Quarto workflow with {quarto-webr} and {quarto-pyodide}☆18Jun 27, 2024Updated last year
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆22Sep 19, 2023Updated 2 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Dec 22, 2025Updated last month
- REference Sequence annotation and CuRatIon Pipeline☆98Updated this week
- bioinformatics for peter☆11Apr 8, 2025Updated 10 months ago
- ☆35Nov 5, 2025Updated 3 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆25Oct 29, 2020Updated 5 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 2 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Jan 23, 2026Updated 3 weeks ago
- A script to make downloading of SRA/GEO data easier☆33Oct 6, 2023Updated 2 years ago
- ☆10Jan 26, 2026Updated 2 weeks ago
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- Fast, accurate taxonomic assignments for the human vaginal microbiota☆11Updated this week
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆144Nov 8, 2025Updated 3 months ago
- ☆12Apr 5, 2022Updated 3 years ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆37May 25, 2023Updated 2 years ago
- Scripts☆10Jun 29, 2016Updated 9 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- ☆10Jul 13, 2022Updated 3 years ago
- This is a new deep-learning pipeline for AMP predictions☆16Mar 5, 2025Updated 11 months ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 6 years ago
- rcookbook☆10Oct 14, 2016Updated 9 years ago