Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes
☆10Nov 14, 2022Updated 3 years ago
Alternatives and similar repositories for miseq_bin
Users that are interested in miseq_bin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆17Apr 18, 2024Updated 2 years ago
- ☆15Feb 6, 2020Updated 6 years ago
- edit distance sequence tags and helpers☆12Feb 4, 2021Updated 5 years ago
- qiime2 plugin for aldex2 for differential abundance analysis☆11Mar 5, 2020Updated 6 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio☆15Updated this week
- Functions for compositional analysis of high throughput sequencing☆29Dec 8, 2023Updated 2 years ago
- Look Up Guild Information for Fungi in R☆26Aug 14, 2026Updated 2 months ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 11 months ago
- Repo for course Tools for complex data analysis☆11Jul 15, 2024Updated 2 years ago
- Noisebridge's donation infrastructure☆16Feb 28, 2020Updated 6 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆17Jun 13, 2023Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆21Updated this week
- Research codebase accompanying the ICLR 2026 paper DriftLite: Lightweight Drift Control for Inference-Time Scaling of Diffusion Models.☆15May 1, 2026Updated 6 months ago
- ☆10Apr 6, 2024Updated 2 years ago
- Tools for visualising microbial community amplicon data☆74Nov 3, 2025Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆37Oct 26, 2020Updated 6 years ago
- Utilities for pre-processing emission-excitation-matrix (EEM).☆21Dec 17, 2025Updated 10 months ago
- ☆13Jun 24, 2019Updated 7 years ago
- fastx-utils using klib☆19Sep 1, 2020Updated 6 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Aug 2, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆20Feb 25, 2026Updated 8 months ago
- A user-friendly tool to screen antimicrobial resistance in fungal genomes☆21May 8, 2026Updated 5 months ago
- Trevor Wishart's GUI Front End for the CDP System☆20May 3, 2026Updated 6 months ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆27Oct 16, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆37Jul 15, 2026Updated 3 months ago
- A python bot framework for slack☆21Mar 20, 2024Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Nov 22, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 7 months ago
- Code repository for R Data Mining Blueprints, published by Packt☆10Jan 14, 2021Updated 5 years ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- mvabund updates☆10Mar 10, 2024Updated 2 years ago
- R code for analyses in the manuscript "Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhi…☆10Mar 19, 2021Updated 5 years ago
- ☆15Jun 26, 2025Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 3 years ago