Alternatives and similar repositories for MicroHapDB

Users that are interested in MicroHapDB are comparing it to the libraries listed below

• HuntsmanCancerInstitute / USeq
  180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…
  ☆18Updated 3 months ago
• EtieM / outLyzer
  An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
  ☆11Updated 2 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• macarthur-lab / gnomad_mnv
  Multi-nucleotide variants (MNVs) in gnomAD 2.1
  ☆12Updated 3 years ago
• xia-lab / Seq2Fun
  ☆17Updated 7 months ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• primer3-org / primer3plus
  Primer3Plus is an advanced web interface for primer3.
  ☆44Updated 9 months ago
• maxplanck-ie / TheWhoTheWhatTheHuh
  "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
  ☆11Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆40Updated 2 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆31Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• yuhanH / HPViewer
  ☆15Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 7 months ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 7 years ago
• hzaurzli / MicroWorldOmics
  ☆15Updated 4 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆36Updated 7 months ago
• molgenis / capice
  ☆27Updated last year
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated 2 weeks ago
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆28Updated 5 months ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆30Updated 10 months ago
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆29Updated 3 years ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆24Updated 3 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated 5 months ago
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆57Updated 2 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆33Updated 2 years ago