Alternatives and similar repositories for MicroHapDB

Users that are interested in MicroHapDB are comparing it to the libraries listed below

• macarthur-lab / gnomad_mnv
  Multi-nucleotide variants (MNVs) in gnomAD 2.1
  ☆12Updated 3 years ago
• HuntsmanCancerInstitute / USeq
  180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…
  ☆18Updated last month
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• EtieM / outLyzer
  An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
  ☆11Updated 2 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated 10 months ago
• maxplanck-ie / TheWhoTheWhatTheHuh
  "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.
  ☆11Updated 3 years ago
• hillerlab / CESAR2.0
  ☆29Updated 3 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆31Updated 4 months ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆34Updated 4 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• NCGG-MGC / IMSindel
  IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …
  ☆16Updated 2 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆30Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• molgenis / capice
  ☆27Updated last year
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated 2 years ago
• ASaiM / framework
  Open-source opinionated Galaxy-based framework for microbiota analysis
  ☆14Updated 4 years ago
• molgenis / vip
  Variant Interpretation Pipeline
  ☆45Updated last week
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated last week
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated 2 months ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆36Updated 6 months ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆30Updated 4 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆28Updated 4 months ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 4 years ago