Alternatives and similar repositories for MicroHapDB:

Users that are interested in MicroHapDB are comparing it to the libraries listed below

• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆15Updated 7 years ago
• EtieM / outLyzer
  An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice
  ☆11Updated last year
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆12Updated 4 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆23Updated 2 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated this week
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆23Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• COMBINE-lab / grouper
  ☆15Updated 5 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆27Updated 3 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆38Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 8 months ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated last year
• HuntsmanCancerInstitute / USeq
  180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…
  ☆17Updated last week
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated 5 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆21Updated 6 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 8 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆39Updated 2 years ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated last week
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆32Updated 8 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆36Updated last year
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated 8 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• UofABioinformaticsHub / shinyNgsreports
  The shiny app that accompanies the ngsReports R package
  ☆14Updated 3 years ago
• eclarke / komplexity
  A method of assessing sequence complexity based on kmer frequencies
  ☆31Updated 6 years ago