Alternatives and similar repositories for qsimscan

Users that are interested in qsimscan are comparing it to the libraries listed below

• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆13Updated 6 months ago
• gamcil / clustermap.js
  ☆31Updated 4 years ago
• wwood / OrfM
  simple and not slow ORF caller
  ☆21Updated 2 months ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 9 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• pirovc / metameta
  ☆23Updated 6 years ago
• nickloman / poredb
  ☆18Updated 8 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated 2 years ago
• qunfengdong / MicroGMT
  Mutation tracker for microbial genomes
  ☆14Updated 5 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated 2 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 4 years ago
• jbloomlab / phydms
  phylogenetic analyses informed by deep mutational scanning data
  ☆15Updated last year
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆36Updated 3 weeks ago
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 7 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆23Updated last year
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• caraweisman / abSENSE
  Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…
  ☆18Updated last year
• hallamlab / LAST-Plus
  Parallel implementation of the LAST aligner
  ☆18Updated 9 years ago
• lh3 / nasw
  Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift
  ☆19Updated last year
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 5 months ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated last year
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆43Updated 2 weeks ago
• kosticlab / aether
  Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.
  ☆13Updated 8 years ago
• lmward / MetaPOAP
  the Metagenomic test for Presence Or Absence of Pathways
  ☆13Updated 6 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 7 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 3 months ago
• richardmleggett / acc2tax
  Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings
  ☆14Updated 2 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 5 years ago