Alternatives and similar repositories for qsimscan

Users that are interested in qsimscan are comparing it to the libraries listed below

• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆29Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆18Updated 4 years ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 3 years ago
• camillescott / shmlast
  blast, shmlast
  ☆22Updated 4 years ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated last month
• KThorellGroup / BACTpipe
  BACTpipe: An assembly and annotation pipeline for bacterial genomics
  ☆20Updated 5 months ago
• linsalrob / partie
  PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…
  ☆26Updated 2 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 4 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 8 months ago
• edgraham / BinSanity
  Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
  ☆29Updated 3 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆11Updated 6 years ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• kbaseattic / genome_annotation
  The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…
  ☆10Updated 4 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• ngless-toolkit / ng-meta-profiler
  Profiler for metagenomics based on NGLess
  ☆13Updated last year
• aweimann / traitar
  ☆22Updated 2 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• snayfach / IGGsearch
  Metagenomic species profiling with enhanced coverage of the human gut microbiome
  ☆25Updated last year
• FredHutch / FAMLI
  Functional Analysis of Metagenomes by Likelihood Inference
  ☆17Updated 5 years ago
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆12Updated 4 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆21Updated last year
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆34Updated 2 weeks ago