Profiler for metagenomics based on NGLess
☆13Feb 22, 2024Updated 2 years ago
Alternatives and similar repositories for ng-meta-profiler
Users that are interested in ng-meta-profiler are comparing it to the libraries listed below
Sorting:
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- ☆11Mar 11, 2025Updated 11 months ago
- MicrobeRX☆16Aug 11, 2025Updated 6 months ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆14Nov 26, 2023Updated 2 years ago
- ☆57Feb 18, 2026Updated 2 weeks ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- repo for cicese metatranscriptomics workshop, nov 2018☆14Jan 22, 2020Updated 6 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- ☆19Dec 4, 2025Updated 3 months ago
- A manually curated database of human gut metabolic modules.☆17Jul 27, 2018Updated 7 years ago
- MGnify API toolkit☆19Jan 31, 2025Updated last year
- Automatically calculate phylogenetic trees from bacterial core genes☆20May 13, 2025Updated 9 months ago
- Bioinformatics program inStrain☆181May 9, 2025Updated 9 months ago
- DAS Tool☆168May 2, 2024Updated last year
- A toolkit to validate and consolidate antimicrobial resistance gene databases☆20Apr 21, 2023Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Feb 3, 2023Updated 3 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Jan 5, 2022Updated 4 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆19May 22, 2020Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Oct 22, 2025Updated 4 months ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated last month
- ☆22Nov 12, 2025Updated 3 months ago
- ☆22Nov 6, 2020Updated 5 years ago
- https://gdancik.github.io/shinyGEO/☆25Apr 13, 2021Updated 4 years ago
- gutSMASH☆58Oct 3, 2025Updated 5 months ago
- Deep learning for Metagenome Assembly Error Detection☆25Nov 30, 2020Updated 5 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- ☆35Nov 5, 2025Updated 4 months ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- ☆24Dec 5, 2018Updated 7 years ago
- Virus Identification By iteRative ANnoTation☆186Apr 15, 2024Updated last year
- ☆32Jun 12, 2023Updated 2 years ago
- Sample Metadata Curation for curatedMetagenomicData☆30Updated this week
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago