Alternatives and similar repositories for ng-meta-profiler

Users that are interested in ng-meta-profiler are comparing it to the libraries listed below

• Shenhav-and-Korem-labs / SCRuB
  ☆32Updated 9 months ago
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 8 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆34Updated last month
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆64Updated 2 weeks ago
• KoslickiLab / fmh-funprofiler
  A functional profiler for metagenomes using FracMinHash
  ☆17Updated 3 months ago
• lozuponelab / AMON
  Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…
  ☆23Updated last year
• katiesaund / hogwash
  Three bacterial GWAS methods all rolled into one easy-to-use R package
  ☆22Updated last year
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• balabanmetin / uDance
  ☆41Updated last year
• biobakery / waafle
  http://huttenhower.sph.harvard.edu/waafle
  ☆21Updated 10 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆42Updated 2 years ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆53Updated last week
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆32Updated 3 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆27Updated last year
• wdl2459 / ConQuR
  Batch effects removal for microbiome data via conditional quantile regression
  ☆31Updated 3 years ago
• attayeb / snaq
  Qiime2 snakemake pipeline
  ☆19Updated last year
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated 2 years ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated 11 months ago
• deng-lab / viroprofiler
  A containerized bioinformatics pipeline for viral metagenomic data analysis
  ☆37Updated last year
• jkzorz / SituSeq
  workflows for offline analysis of 16S rRNA Nanopore data
  ☆16Updated 2 years ago
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆31Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 9 months ago
• EBI-Metagenomics / kegg-pathways-completeness-tool
  ☆28Updated 8 months ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated 4 months ago
• meglecz / mkCOInr
  Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options
  ☆16Updated 4 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• caporaso-lab / tax-credit-data
  raw data from tax-credit project
  ☆14Updated 6 years ago
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆25Updated 6 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago