xiaole99 / ARGs-OAP-v2.0-development
This is the source code for ARGs-OAP v2.0 construction
☆12Updated 5 years ago
Alternatives and similar repositories for ARGs-OAP-v2.0-development:
Users that are interested in ARGs-OAP-v2.0-development are comparing it to the libraries listed below
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- ☆18Updated 4 months ago
- code repo for mobileOG-db☆33Updated last week
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆43Updated 3 years ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆15Updated 2 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- ☆50Updated 11 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆24Updated 2 weeks ago
- ☆48Updated 9 months ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆25Updated last year
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆13Updated 5 months ago
- Extract metadata from biosamples in NCBI☆11Updated 3 years ago
- whole genome MLST analysis☆40Updated 8 months ago
- Discover and annotate the virome☆35Updated 3 months ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆23Updated 3 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆42Updated last year
- ☆28Updated last year
- ☆49Updated 4 years ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year