ArifaKhanLab / RVDB
A reference viral database (RVDB)
☆26Updated 6 years ago
Alternatives and similar repositories for RVDB:
Users that are interested in RVDB are comparing it to the libraries listed below
- catalog for long-read sequencing tools☆32Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Generate unique KMERs for every contig in a FASTA file☆44Updated 2 years ago
- Filter SAM file for soft and hard clipped alignments☆46Updated 7 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 10 months ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- python plotly Circos from VCF☆31Updated 6 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆22Updated 3 years ago
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- ☆29Updated 3 years ago
- Pan-Genomic Matching Statistics☆48Updated 9 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆31Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- web documentation for Trinotate☆48Updated last year
- ☆79Updated 8 months ago