Long read metagenomics practical at EBAME18
☆18Oct 3, 2018Updated 7 years ago
Alternatives and similar repositories for EBAME18
Users that are interested in EBAME18 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- multi-tool QC for minion data☆10May 28, 2018Updated 8 years ago
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 8 months ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 4 months ago
- Comprehensive resistance detection from WGS data☆20Jun 4, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated 4 months ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆101Jul 8, 2022Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆35Apr 16, 2024Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Nov 12, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Disease outbreak reconstruction from epidemiological and genetic data☆36Apr 20, 2026Updated 2 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 6 months ago
- whole genome MLST analysis☆53Jun 17, 2026Updated last week
- Nucleotide-pair encoding of 16S rRNA sequences for host phenotype and biomarker detection☆11Mar 17, 2019Updated 7 years ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated 11 months ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Plasmid exploration of bacterial genomes☆26Mar 2, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- annotation pipeline for microbial genomes and metagenomes☆18Feb 23, 2018Updated 8 years ago
- Basic Sequence Taxonomy Annotator☆44May 14, 2024Updated 2 years ago
- The NanoPipe pipeline analyzes reads generated by the Oxford Nanopore sequencing devices. As a result, it provides alignments to any targ…☆18Dec 21, 2018Updated 7 years ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆51Apr 2, 2025Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 9 months ago
- LoFreq Version 3☆27Feb 25, 2021Updated 5 years ago
- SPANDx - Comparative genomics for next-generation haploid sequence data☆22Jun 9, 2026Updated 3 weeks ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Nov 4, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Simple R script for plotting ideograms and annotating with bed files.☆12Sep 21, 2015Updated 10 years ago
- Reorients assembled microbial sequences☆140Jun 23, 2026Updated last week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 3 years ago
- Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:☆21Nov 7, 2018Updated 7 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago
- Pipeline to run qiime2 with snakemake☆18Apr 17, 2020Updated 6 years ago