imgag / plasmIDentLinks
☆15Updated last year
Alternatives and similar repositories for plasmIDent
Users that are interested in plasmIDent are comparing it to the libraries listed below
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
 - Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
 - Genome size estimation from long read overlaps☆62Updated last week
 - Read contamination removal☆25Updated last year
 - software to identify primers that can distinguish genomes☆20Updated last week
 - Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
 - Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
 - Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
 - Quickly get coverage statistics given reads and an assembly☆16Updated last year
 - Colinear block visualisation tool☆31Updated last year
 - Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
 - Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated this week
 - Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
 - Organism-specific interpretation of AMR genotypes☆14Updated last year
 - Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
 - tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
 - Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
 - A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 5 months ago
 - Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
 - Intra-species bacterial contamination detection☆25Updated 8 months ago
 - Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
 - NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago
 - Get microbial sequence data easier and faster☆28Updated 5 years ago
 - (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
 - Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated 2 weeks ago
 - Fast viral consensus genome reconstruction☆25Updated 3 months ago
 - Variant call verification☆16Updated 5 months ago
 - Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
 - Finding regions of similarity between plasmids☆16Updated 3 years ago
 - Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 7 years ago