imgag / plasmIDentLinks
☆15Updated 11 months ago
Alternatives and similar repositories for plasmIDent
Users that are interested in plasmIDent are comparing it to the libraries listed below
Sorting:
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- Read contamination removal☆25Updated last year
- Methods to determine sequence element (unitig) presence/absence☆20Updated 6 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Fast viral consensus genome reconstruction☆23Updated 2 weeks ago
- Colinear block visualisation tool☆31Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- Visualize microbial evolution at the SNP level!☆14Updated last month
- Library of sketching functions used by PopPUNK☆31Updated 2 months ago
- Variant call verification☆16Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆12Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 7 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- ☆16Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year