rrwick / Fast5-to-FastqLinks
A simple tool for extracting reads from Oxford Nanopore fast5 files
☆26Updated 8 years ago
Alternatives and similar repositories for Fast5-to-Fastq
Users that are interested in Fast5-to-Fastq are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- ☆26Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- ☆30Updated 2 years ago
- ☆53Updated 4 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆30Updated last year
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- UCSC Nanopore☆44Updated 6 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 3 years ago
- ☆50Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- ☆49Updated last year