rrwick / Fast5-to-FastqLinks
A simple tool for extracting reads from Oxford Nanopore fast5 files
☆26Updated 8 years ago
Alternatives and similar repositories for Fast5-to-Fastq
Users that are interested in Fast5-to-Fastq are comparing it to the libraries listed below
Sorting:
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- ☆26Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- ☆49Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Structural variant caller☆55Updated 4 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago
- The buttery eel - a slow5 guppy/dorado basecaller wrapper☆41Updated last week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- ☆30Updated last year
- ☆53Updated 4 years ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 8 months ago
- ☆30Updated last year
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago