rrwick / Fast5-to-Fastq
A simple tool for extracting reads from Oxford Nanopore fast5 files
☆26Updated 7 years ago
Alternatives and similar repositories for Fast5-to-Fastq:
Users that are interested in Fast5-to-Fastq are comparing it to the libraries listed below
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆19Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- ☆30Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Quality control plotting for long reads☆10Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Classifier for metagenomic sequences☆29Updated 6 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆32Updated 4 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 7 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago