rrwick / Fast5-to-Fastq
A simple tool for extracting reads from Oxford Nanopore fast5 files
☆26Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for Fast5-to-Fastq
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- ☆27Updated 11 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 7 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Remove lambda phage reads from a fastq file☆28Updated last year
- ☆51Updated 3 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- Predict MLST directly from uncorrected long reads☆25Updated 2 years ago
- de.NBI Nanopore Training Course☆19Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- Pan-Genomic Matching Statistics☆48Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆22Updated 2 weeks ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago
- ☆46Updated 4 months ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆25Updated last month
- ☆26Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Classifier for metagenomic sequences☆28Updated 6 years ago
- Quality control plotting for long reads☆10Updated 6 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆34Updated 3 years ago
- ✏️ Genome assembly polishing & SNV detection☆64Updated this week
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 6 years ago
- ☆12Updated 5 years ago
- ☆34Updated 4 years ago