qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
☆79Dec 15, 2020Updated 5 years ago
Alternatives and similar repositories for qcat
Users that are interested in qcat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated 2 years ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆524May 20, 2026Updated 3 months ago
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 5 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Protobuff and gRPC specifications for the MinKNOW LIMS Interface☆13Apr 20, 2021Updated 5 years ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆83Jul 24, 2026Updated last month
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- quality filtering tool for long reads☆412Sep 17, 2025Updated 11 months ago
- The ARTIC fieldbioinformatics pipeline☆136Updated this week
- Plotting scripts for long read sequencing data☆560Aug 18, 2026Updated 2 weeks ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆85Jul 4, 2022Updated 4 years ago
- A MinION-based pipeline for tracking species biodiversity☆13Feb 19, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analysis components from Oxford Nanopore Research☆99Jul 1, 2026Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆129Feb 16, 2024Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆117Nov 20, 2023Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆110Feb 7, 2023Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated 2 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Comparison of multiple long read datasets☆180Aug 3, 2026Updated 3 weeks ago
- ☆35Feb 20, 2020Updated 6 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆308Jun 9, 2026Updated 2 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year