Alternatives and similar repositories for qcat

Users that are interested in qcat are comparing it to the libraries listed below

• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• rrwick / Metagenomics-Index-Correction
  ☆82Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆90Updated 4 years ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆80Updated 5 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆73Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 8 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆146Updated 3 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆93Updated last year
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆37Updated 2 months ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• nsoranzo / sspace_basic
  SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
  ☆47Updated 4 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆112Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated last month
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated 3 weeks ago
• epi2me-labs / wf-basecalling
  ☆39Updated this week
• ngs-fzb / MTBseq_source
  MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…
  ☆44Updated 9 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 10 months ago
• jhawkey / IS_mapper
  IS mapping software
  ☆54Updated 3 years ago
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆80Updated 2 weeks ago
• LooseLab / bulkvis
  ☆48Updated 6 months ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 8 months ago