yangjl / pseudoRefLinks
Make Pseudo-Reference Genome from VCF/BCF
☆14Updated 4 years ago
Alternatives and similar repositories for pseudoRef
Users that are interested in pseudoRef are comparing it to the libraries listed below
Sorting:
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆26Updated 6 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Tools and Utilities for msmc and msmc2☆48Updated last month
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A box of genomics tools☆21Updated 5 years ago
- read and analyse RepeatMasker output☆25Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 weeks ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆73Updated 4 years ago
- ☆32Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆24Updated 8 years ago
- ☆25Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago