Make Pseudo-Reference Genome from VCF/BCF
☆14Oct 5, 2020Updated 5 years ago
Alternatives and similar repositories for pseudoRef
Users that are interested in pseudoRef are comparing it to the libraries listed below
Sorting:
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Feb 15, 2022Updated 4 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- ☆12Jan 15, 2021Updated 5 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- ☆12Aug 16, 2016Updated 9 years ago
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Sep 19, 2022Updated 3 years ago
- ☆14Jun 6, 2023Updated 2 years ago
- Resources for the Col-CEN reference genome assemblies☆11Feb 15, 2022Updated 4 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- 🧬Genomes to proteins, multi-level visualization library☆14Nov 23, 2025Updated 3 months ago
- RNA-Skim: a rapid method for RNA-Seq quantification at transcript level☆19Sep 3, 2017Updated 8 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Pipelines for Drosophila genome assembly and analysis☆16May 15, 2022Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- Process MS results in R, in a tidy way☆16May 25, 2018Updated 7 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- ☆20Sep 10, 2020Updated 5 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated 11 months ago
- Utilities for analyzing next generation sequencing data☆17Sep 28, 2018Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 3 years ago
- Scripts and instructions for submitting annotated microbial genomes to Genbank☆15Feb 23, 2016Updated 10 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- Better Alignments with Translated HMMER☆24Updated this week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆27Apr 3, 2025Updated 10 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago