yangjl / pseudoRef
Make Pseudo-Reference Genome from VCF/BCF
☆14Updated 4 years ago
Alternatives and similar repositories for pseudoRef:
Users that are interested in pseudoRef are comparing it to the libraries listed below
- Transposable Elements MOvement detection using LOng reads☆21Updated 2 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Likelihood-based Selective Sweep Detection☆37Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- ☆24Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- ☆24Updated 2 weeks ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- ☆29Updated this week
- Transposable element polymorphism identification☆33Updated 4 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- info and docs for the Wright Lab☆14Updated 9 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆48Updated 2 weeks ago
- ☆11Updated 2 years ago
- A box of genomics tools☆21Updated 4 years ago
- ☆32Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago