yangjl / pseudoRef
Make Pseudo-Reference Genome from VCF/BCF
☆14Updated 4 years ago
Alternatives and similar repositories for pseudoRef:
Users that are interested in pseudoRef are comparing it to the libraries listed below
- Population genetics analyses from NGS data☆25Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆30Updated last week
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 3 weeks ago
- ☆22Updated 11 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Genealogical Estimation of Variant Age (GEVA)☆28Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- ☆24Updated last month
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆37Updated last year
- scripts to parse and analyse MCScanX collinearity output☆30Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- ☆24Updated 7 years ago
- A box of genomics tools☆21Updated 4 years ago
- ☆32Updated 4 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆11Updated 2 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Deleterious mutation prediction pipeline☆13Updated 3 months ago