yangjl / pseudoRefLinks
Make Pseudo-Reference Genome from VCF/BCF
☆14Updated 4 years ago
Alternatives and similar repositories for pseudoRef
Users that are interested in pseudoRef are comparing it to the libraries listed below
Sorting:
- Tools and Utilities for msmc and msmc2☆48Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 4 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Infer demographic history with the Moran model☆47Updated last month
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Analyze and simulate Pool-Seq time series data☆15Updated 3 years ago
- ☆26Updated 4 months ago
- ☆24Updated last year
- ☆24Updated 8 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago