Code repository for the Global Ant Genomics Alliance
☆17Jun 16, 2025Updated last year
Alternatives and similar repositories for GAGA
Users that are interested in GAGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆19Nov 29, 2024Updated last year
- ☆10Sep 17, 2026Updated last week
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 9 months ago
- ☆25Nov 29, 2022Updated 3 years ago
- ☆24Feb 26, 2026Updated 6 months ago
- Performs MCMCglmm on multiple phylogenetic trees☆11Apr 17, 2025Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 6 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scripts used in the annotation of B10K genomes☆16Jun 1, 2020Updated 6 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- Phylogenetic profiling with orthology data☆13Updated this week
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 5 months ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Jul 24, 2026Updated 2 months ago
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated last year
- Metagenome sequencing pipeline 宏基因组分析流程☆12Aug 29, 2022Updated 4 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆71Sep 17, 2026Updated last week
- defusion☆14Aug 24, 2021Updated 5 years ago
- FOR my learing☆12Feb 19, 2026Updated 7 months ago
- Foreign Contamination Screening - GX source code☆28Jun 9, 2025Updated last year