Code repository for the Global Ant Genomics Alliance
☆18Jun 16, 2025Updated last year
Alternatives and similar repositories for GAGA
Users that are interested in GAGA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 9 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆55Dec 10, 2025Updated 6 months ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- ☆17Mar 2, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scripts used in the annotation of B10K genomes☆16Jun 1, 2020Updated 6 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Phylogenetic profiling with orthology data☆13May 11, 2026Updated last month
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 4 months ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 3 years ago
- Configurable Chat Interface for CKAN☆13Feb 10, 2026Updated 4 months ago
- Pipeline for Phylostratigraphy☆13Nov 2, 2022Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An efficient way to convert gff3 annotation files into EMBL format ready to submit.☆67Jul 31, 2025Updated 11 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Scripts for homology and orthology assessment from genomic sequences.☆19Oct 5, 2020Updated 5 years ago
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 6 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- A simple and lightweight parallel task engine☆35Aug 12, 2024Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 7 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Jun 9, 2025Updated last year
- A phylogenetic profile analysis tool☆38Jun 1, 2026Updated last month
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Feb 25, 2021Updated 5 years ago
- PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding☆11Mar 31, 2021Updated 5 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆11Sep 4, 2024Updated last year
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated 2 months ago
- ☆31Apr 16, 2023Updated 3 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆55Dec 15, 2025Updated 6 months ago
- Phylogenetic orthology inference for comparative genomics☆154Jun 26, 2026Updated last week