helixcn / phylotoolsLinks
Phylogenetic tools for Eco-phylogenetics
☆13Updated last year
Alternatives and similar repositories for phylotools
Users that are interested in phylotools are comparing it to the libraries listed below
Sorting:
- Python version of PHLAWD☆21Updated last year
- ☆24Updated 7 months ago
- ☆19Updated last year
- ☆12Updated 2 years ago
- A program for multimodel inference on speciation and trait evolution☆34Updated 8 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- DataColor: Unveiling Biological Data Relationships through Distinctive Color Mapping☆16Updated 2 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 3 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 6 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- Create your own PanViz visualizations☆21Updated 8 years ago
- ☆12Updated this week
- Scalable relaxed clock phylogenetic dating☆27Updated 2 months ago
- PanGenomePipeline☆16Updated last year
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13Updated last year
- ☆11Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last year
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Updated 4 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆17Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- An R package to perform systematic quality checks on comparative genomics analyses☆11Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- ☆31Updated 2 months ago
- Processing support for Greengenes2☆14Updated 2 years ago