Alternatives and similar repositories for SLAT:

Users that are interested in SLAT are comparing it to the libraries listed below

• QuKunLab / SPACEL
  ☆56Updated 8 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆36Updated last year
• zcang / COMMOT
  ☆114Updated 11 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆74Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆61Updated 2 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆68Updated 2 months ago
• LieberInstitute / HumanPilot
  Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
  ☆79Updated 10 months ago
• LieberInstitute / spatialLIBD
  Code for the spatialLIBD R/Bioconductor package and shiny app
  ☆91Updated last week
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆91Updated 2 years ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆115Updated 2 weeks ago
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆87Updated last month
• navinlabcode / CellTrek
  ☆116Updated 3 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆65Updated 3 weeks ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆59Updated 2 years ago
• QuKunLab / SpatialBenchmarking
  ☆119Updated 2 years ago
• JinmiaoChenLab / GraphST
  ☆112Updated last year
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated last month
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆68Updated last year
• OSU-BMBL / deepmaps
  Single-cell biological network inference using a heterogeneous graph transformer
  ☆72Updated last month
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆63Updated 10 months ago
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆56Updated last year
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last month
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆124Updated last month
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆26Updated 6 months ago
• TencentAILabHealthcare / spatialID
  ☆38Updated 2 years ago
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆55Updated 2 years ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆57Updated 9 months ago
• prabhakarlab / Banksy_py
  ☆45Updated 4 months ago