gao-lab / SLATLinks
Spatial-Linked Alignment Tool
☆88Updated 8 months ago
Alternatives and similar repositories for SLAT
Users that are interested in SLAT are comparing it to the libraries listed below
Sorting:
- ☆122Updated 3 years ago
- ☆59Updated last year
- overview of spatial datasets☆76Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆45Updated last year
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆67Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 6 months ago
- ☆124Updated last year
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- ☆61Updated last month
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 7 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆73Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆128Updated last year
- Cell clustering for spatial transcriptomics data with graph neural network☆63Updated 2 years ago
- ☆60Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆57Updated last year
- ☆61Updated 10 months ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆96Updated this week
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆24Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 6 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆46Updated 2 years ago
- ☆21Updated last year
- ☆30Updated 2 years ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- Code used to benchmark Xenium☆66Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated this week
- ☆114Updated 3 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year