Alternatives and similar repositories for SLAT

Users that are interested in SLAT are comparing it to the libraries listed below

• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆48Updated last year
• QuKunLab / SPACEL
  ☆60Updated last year
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆76Updated last year
• QuKunLab / SpatialBenchmarking
  ☆127Updated 3 years ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆97Updated last month
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆96Updated 9 months ago
• JinmiaoChenLab / SpatialGlue
  SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
  ☆73Updated last year
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆77Updated 3 years ago
• zcang / COMMOT
  ☆125Updated last year
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆69Updated 3 weeks ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆74Updated last year
• xiaoyeye / CCST
  Cell clustering for spatial transcriptomics data with graph neural network
  ☆64Updated 2 years ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆144Updated last week
• QIFEIDKN / STAGATE_pyG
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…
  ☆61Updated 2 years ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆71Updated last year
• JinmiaoChenLab / SEDR
  ☆64Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• hongleir / SpaceFlow
  ☆31Updated 2 years ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 10 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆39Updated last year
• sldyns / SpaHDmap
  Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
  ☆11Updated 3 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆125Updated 6 months ago
• LieberInstitute / spatialLIBD
  Code for the spatialLIBD R/Bioconductor package and shiny app
  ☆104Updated last week
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆44Updated 3 months ago
• SydneyBioX / scJoint
  ☆61Updated 2 years ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• JinmiaoChenLab / GraphST
  ☆139Updated last year
• dpeerlab / ENVI
  ☆50Updated last month
• XLearning-SCU / scBridge
  ☆21Updated last year
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 3 months ago