Inferring gene co-expression networks from single cell gene expression data
☆28Aug 5, 2022Updated 3 years ago
Alternatives and similar repositories for scLink
Users that are interested in scLink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆28Jul 8, 2025Updated 8 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated 11 months ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- pythonic ggplot image combinations https://benjaminleroy.github.io/cowpatch☆10Feb 12, 2023Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- ☆65Sep 13, 2024Updated last year
- Join subcellular Visium HD bins into cells☆138Nov 4, 2025Updated 4 months ago
- ☆15Jun 27, 2025Updated 8 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆82Jan 23, 2025Updated last year
- scTM: A package for topic modelling in transcriptomics data☆24May 1, 2024Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Code repository for TCAT analyses☆13Sep 26, 2025Updated 5 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆14Oct 16, 2017Updated 8 years ago
- ☆19Feb 15, 2025Updated last year
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 3 years ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 3 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 2 years ago
- R package for normalisation of spatial transcriptomics data☆17Jan 21, 2026Updated 2 months ago
- ☆27Oct 23, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Identifying tumor cells at the single-cell level using machine learning☆50Nov 10, 2024Updated last year
- AR1MA1 - VBEM reverse engineering GRNs method☆10Sep 26, 2019Updated 6 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆18Jan 18, 2026Updated 2 months ago
- ☆12May 21, 2025Updated 10 months ago
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- All documentation associated with bioinformatics tutorial on the Alpine cluster