Vivianstats / scLinkLinks
Inferring gene co-expression networks from single cell gene expression data
☆24Updated 2 years ago
Alternatives and similar repositories for scLink
Users that are interested in scLink are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- ☆41Updated 4 years ago
- ☆23Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆36Updated 11 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆12Updated last year
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- ☆35Updated 3 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An analytics package for single cell data☆22Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- binned motif enrichment analysis and visualisation☆40Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated 3 weeks ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- scover☆23Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago