Inferring gene co-expression networks from single cell gene expression data
☆29Aug 5, 2022Updated 4 years ago
Alternatives and similar repositories for scLink
Users that are interested in scLink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆31Jul 8, 2025Updated last year
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆228Updated this week
- pythonic ggplot image combinations https://benjaminleroy.github.io/cowpatch☆10Feb 12, 2023Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- ☆68Sep 13, 2024Updated last year
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 months ago
- ☆15Jun 27, 2025Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆83Jan 23, 2025Updated last year
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 3 years ago
- SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression pro…☆15Oct 16, 2017Updated 8 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆20Jan 18, 2026Updated 6 months ago
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 4 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 4 years ago
- Identifying tumor cells at the single-cell level using machine learning☆51Nov 10, 2024Updated last year
- R package for normalisation of spatial transcriptomics data☆18Jul 27, 2026Updated 2 weeks ago
- ☆26Oct 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- AR1MA1 - VBEM reverse engineering GRNs method☆11Sep 26, 2019Updated 6 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- Repository for the HPC & Data Science Summer Institute 2024☆12Mar 7, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆12May 21, 2025Updated last year
- scripts for analysis associated with Cas9Enrichment publication☆12Feb 10, 2020Updated 6 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136Jul 24, 2026Updated 3 weeks ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆22Jul 19, 2022Updated 4 years ago
- ☆13Aug 9, 2022Updated 4 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 3 months ago
- ☆12Jan 27, 2023Updated 3 years ago
- Co-expression network management based on WGCNA + k-means☆22May 11, 2021Updated 5 years ago