fish-quant / ComSegLinks
comseg
☆24Updated 7 months ago
Alternatives and similar repositories for ComSeg
Users that are interested in ComSeg are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- Spatial Single-Cell Analysis Toolkit☆99Updated 2 months ago
- Integrated pipeline for multiplexed image analysis☆96Updated 5 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Interactive visualization of spatial omics data☆66Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated 11 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆75Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆226Updated this week
- ☆68Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆53Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 4 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 2 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- A pipeline to transform images into valuable analysis items☆14Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- ☆39Updated last year
- ☆27Updated 11 months ago
- A toolkit for processing multiplexed tissue images☆63Updated last month
- ☆15Updated 3 years ago
- Multiple-choice microscopy pipeline☆136Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆47Updated 2 months ago
- ☆34Updated last year
- ☆57Updated last week
- ☆54Updated 7 months ago
- ☆37Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆16Updated last week