comseg
☆24Feb 6, 2025Updated last year
Alternatives and similar repositories for ComSeg
Users that are interested in ComSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Mar 30, 2026Updated 3 weeks ago
- rna2seg☆23May 15, 2025Updated 11 months ago
- Deep learning based spot detection for FISH images.☆34Jan 7, 2026Updated 3 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆275Apr 23, 2026Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆167Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Notebooks to illustrate how BigFISH is working.☆12Sep 5, 2022Updated 3 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆27Oct 21, 2025Updated 6 months ago
- ☆92Updated this week
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Pipeline for designing custom probes against human genes☆22Jan 30, 2026Updated 2 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆204Apr 23, 2026Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Mar 12, 2026Updated last month
- An open and interoperable data framework for spatial omics data☆363Apr 20, 2026Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆49Jul 16, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- ☆30Dec 30, 2025Updated 4 months ago
- A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.☆34Apr 6, 2026Updated 3 weeks ago
- ☆45Feb 13, 2026Updated 2 months ago
- ☆15Jun 27, 2025Updated 10 months ago
- A novel method for single-cell diagonal integration: scConfluence☆27Nov 3, 2025Updated 5 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆71Nov 20, 2023Updated 2 years ago
- ☆19Jul 30, 2024Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆24Jun 10, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Single-cell spatial omics analysis that makes you happy!☆61Updated this week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated this week
- Registry for scverse ecosystem packages☆36Apr 22, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆111Mar 11, 2026Updated last month
- ☆17Mar 26, 2026Updated last month
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Apr 20, 2026Updated last week
- Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).☆17Dec 16, 2024Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Jan 5, 2023Updated 3 years ago
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Nov 10, 2025Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Detect and track football players☆10Jul 25, 2018Updated 7 years ago
- Toolbox for the analysis of smFISH images.☆76Oct 31, 2023Updated 2 years ago
- Block-wise operations for large nD volumes☆46Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Nov 6, 2025Updated 5 months ago
- Fusion strategies to build multimodal predictors for the prediction of immunotherapy response in non-small cell lung cancer☆16Jan 13, 2025Updated last year
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 10 months ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last month