Alternatives and similar repositories for ComSeg:

Users that are interested in ComSeg are comparing it to the libraries listed below

• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆43Updated 9 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆90Updated this week
• wollmanlab / JSTA
  ☆14Updated 3 years ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆86Updated 3 weeks ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 2 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆35Updated 11 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 8 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆77Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 9 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆26Updated this week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆53Updated this week
• KerenLab / CellSighter
  ☆32Updated last year
• HiDiHlabs / ssam
  ☆28Updated 6 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆63Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated 3 weeks ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 7 months ago
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆10Updated 2 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆39Updated last week
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated 2 weeks ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆30Updated 10 months ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆30Updated 11 months ago
• ElementoLab / utag
  ☆34Updated last year
• prabhakarlab / Banksy_py
  ☆46Updated 4 months ago
• yuqiyuqitan / SPACEc
  ☆32Updated last week
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆14Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆53Updated 2 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆26Updated last week
• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆21Updated 8 months ago
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆187Updated last week