☆70Nov 6, 2024Updated last year
Alternatives and similar repositories for SEDR
Users that are interested in SEDR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆41Dec 4, 2023Updated 2 years ago
- conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics☆29Feb 16, 2024Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆85Mar 5, 2022Updated 4 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆66Mar 31, 2023Updated 3 years ago
- Identify spatial domain☆92May 29, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆160Mar 19, 2024Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆263Feb 9, 2026Updated 4 months ago
- ☆23Dec 8, 2023Updated 2 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- ☆15Jun 27, 2025Updated 11 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆91Jun 24, 2024Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics (STAGATE software based on pyG framewo…☆69Nov 10, 2023Updated 2 years ago
- ☆15Aug 9, 2023Updated 2 years ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆52Apr 28, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆17Feb 18, 2025Updated last year
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- ☆46May 31, 2024Updated 2 years ago
- ☆31Aug 2, 2023Updated 2 years ago
- Code for the spatialLIBD R/Bioconductor package and shiny app☆113May 20, 2026Updated 3 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆43Jul 1, 2024Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- ☆15Jun 17, 2021Updated 4 years ago
- End-to-end analysis of spatial multi-omics data☆116May 15, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆131Jun 10, 2022Updated 4 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆13Mar 1, 2025Updated last year
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆249May 5, 2026Updated last month
- ☆35Feb 21, 2024Updated 2 years ago
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆26Dec 26, 2023Updated 2 years ago
- ☆53Apr 1, 2021Updated 5 years ago
- a unified single-cell data integration framework by optimal transport☆37Oct 1, 2024Updated last year
- Spatial alignment of single cell transcriptomic data.☆368Jul 1, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆130Updated this week
- ☆63Jul 23, 2024Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆79May 24, 2024Updated 2 years ago
- ☆15Jul 26, 2023Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- ☆53Oct 9, 2025Updated 8 months ago