illuminate6060 / SpotGFView external linksLinks
SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm
☆21Apr 8, 2025Updated 10 months ago
Alternatives and similar repositories for SpotGF
Users that are interested in SpotGF are comparing it to the libraries listed below
Sorting:
- ☆44Oct 24, 2025Updated 3 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Jan 13, 2026Updated last month
- ☆15Jun 27, 2025Updated 7 months ago
- ☆25Oct 25, 2023Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Sep 6, 2024Updated last year
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 9 months ago
- A toolkit of spatial transcriptomic analysis.☆273Updated this week
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Apr 22, 2025Updated 9 months ago
- ☆145Apr 19, 2025Updated 9 months ago
- Spatiotemporal modeling of spatial transcriptomics☆327Jan 12, 2026Updated last month
- Scripts to extract features of cortical folding from MRI☆12Mar 10, 2025Updated 11 months ago
- R语言面向对象编程教程 https://dataxujing.github.io/R_oop/☆37Aug 5, 2018Updated 7 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated last week
- 基于ESP8266和微型舵机的远程灯控制系统,实现远程控制灯的开关☆13Aug 12, 2022Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- [Developmental] Quarto Extension to Enable Google Colaboratory Links with Quarto Documents☆15May 18, 2025Updated 8 months ago
- A Package for Ribosome Profiling Data Analysis☆18Jan 17, 2026Updated 3 weeks ago
- ☆47May 4, 2024Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 4 months ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated 11 months ago
- High quality in silico spectral library generation for data-independent acquisition proteomics☆16Nov 6, 2025Updated 3 months ago
- ☆10Oct 30, 2024Updated last year
- ☆16Jun 28, 2025Updated 7 months ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last week
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 8 months ago
- Format of GWAS summary statistics.☆12Jul 31, 2024Updated last year
- coursier CLI launchers☆14Jan 7, 2026Updated last month
- MaxQuant and Perseus Bug Reporting☆11Mar 19, 2025Updated 10 months ago
- Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…☆12Jan 5, 2022Updated 4 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆12Mar 9, 2025Updated 11 months ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- Short course introducing R programming in the Tidyverse☆11Oct 22, 2024Updated last year
- YAML Perl Module☆20Dec 27, 2023Updated 2 years ago
- Senescent Cell Identification☆47Feb 22, 2024Updated last year