SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm
☆21Apr 8, 2025Updated last year
Alternatives and similar repositories for SpotGF
Users that are interested in SpotGF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Apr 15, 2025Updated last year
- ☆10Apr 7, 2026Updated 4 months ago
- ☆47Jun 1, 2026Updated 2 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆39Jan 13, 2026Updated 6 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆15Jun 27, 2025Updated last year
- ☆28Jun 4, 2023Updated 3 years ago
- ☆13Jul 18, 2025Updated last year
- The scripts used for the analyses in TOME project☆25Nov 28, 2025Updated 8 months ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- A toolkit of spatial transcriptomic analysis.☆289Jul 17, 2026Updated 3 weeks ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- ☆26Feb 9, 2025Updated last year
- ☆156Mar 20, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- ☆33May 4, 2025Updated last year
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- ☆28Apr 9, 2025Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆53Apr 8, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆17Jul 9, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 5 months ago
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Updated this week
- iterative clustering pipeline of big single cell datasets.☆40Sep 5, 2025Updated 11 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆43Mar 30, 2025Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 4 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated last month
- ☆12Jul 10, 2022Updated 4 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- ☆27Oct 25, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆12Dec 22, 2021Updated 4 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Spatial Single Cell transcriptomic library☆22Jan 15, 2026Updated 6 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆133May 29, 2025Updated last year
- A "fairly fast" ISOtope PAttern Calculator for Python☆13Sep 27, 2023Updated 2 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago