SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm
☆21Apr 8, 2025Updated last year
Alternatives and similar repositories for SpotGF
Users that are interested in SpotGF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 3 months ago
- ☆15Jun 27, 2025Updated 9 months ago
- Microbial marker identification from cross-cohort datasets☆14May 15, 2024Updated last year
- ☆26Oct 25, 2023Updated 2 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆147Mar 20, 2026Updated last month
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 11 months ago
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆12Dec 1, 2021Updated 4 years ago
- This is the supplementary code for CRC-multi-kingdom☆17Nov 8, 2021Updated 4 years ago
- A toolkit of spatial transcriptomic analysis.☆275Apr 7, 2026Updated 2 weeks ago
- ☆18Nov 19, 2022Updated 3 years ago
- ☆12Jul 18, 2025Updated 9 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆86Mar 19, 2026Updated last month
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated last year
- Documentation for PEP specification and all PEPkit software☆10Mar 25, 2026Updated 3 weeks ago
- mosaicMPI: mosaic multi-resolution program integration☆12Mar 30, 2026Updated 3 weeks ago
- Spatiotemporal modeling of spatial transcriptomics☆335Feb 25, 2026Updated last month
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆24Jun 14, 2024Updated last year
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- ☆12Mar 1, 2026Updated last month
- Senescent Cell Identification☆51Feb 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆42Dec 18, 2025Updated 4 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 10 months ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆24Mar 4, 2026Updated last month
- A simple plot library☆53Jul 23, 2017Updated 8 years ago
- Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.☆22Jan 6, 2020Updated 6 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- Scripts to extract features of cortical folding from MRI☆12Mar 10, 2025Updated last year
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆20Mar 31, 2025Updated last year
- ☆13Feb 15, 2024Updated 2 years ago
- ☆14Oct 5, 2023Updated 2 years ago
- ☆14Aug 9, 2024Updated last year
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ☆46May 4, 2024Updated last year
- ☆26Apr 9, 2025Updated last year