Dependency-aware deep generative models for multitasking analysis of spatial genomics data
☆48Jul 10, 2024Updated 2 years ago
Alternatives and similar repositories for spaVAE
Users that are interested in spaVAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆95Jun 24, 2024Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- ☆15Jun 27, 2025Updated last year
- Reproducible analyses for the NicheCompass manuscript☆15Updated this week
- code repository for Hutchins et al. "Reconstructing signaling history of single cells via statistical inference" (2025)☆13Sep 19, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆20Updated this week
- Python package for dimension reduction of high-dimensional biological data.☆17May 23, 2018Updated 8 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆32Oct 21, 2025Updated last year
- ☆18Feb 12, 2026Updated 8 months ago
- ☆14Jan 23, 2025Updated last year
- ☆15Sep 23, 2025Updated last year
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆20Jul 24, 2025Updated last year
- miRTrace☆13Jun 14, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tensorflow implementation for the SVGP-VAE model.☆22Jul 19, 2021Updated 5 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Bayesian Analytics for Spatial Segmentation☆34May 4, 2025Updated last year
- ☆30Oct 4, 2024Updated 2 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 10 months ago
- ☆64Apr 5, 2024Updated 2 years ago
- Reproducibility notebooks for resolVI manuscript☆14Apr 17, 2026Updated 6 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Oct 26, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated 9 months ago
- ☆20Jan 28, 2026Updated 9 months ago
- Simple scVI implementation☆13Oct 19, 2026Updated 2 weeks ago
- COSMOS is a computational tool crafted to overcome the challenges associated with integrating spatially resolved multi-omics data. This …☆17Nov 12, 2024Updated last year
- ☆21May 6, 2025Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- a unified single-cell data integration framework by optimal transport☆41Aug 23, 2026Updated 2 months ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆34Jul 17, 2026Updated 3 months ago
- ☆10Jun 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jul 22, 2026Updated 3 months ago
- ☆36Apr 8, 2023Updated 3 years ago
- ☆57Sep 2, 2026Updated 2 months ago
- ☆20May 20, 2021Updated 5 years ago
- ☆11Dec 4, 2023Updated 2 years ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆53Dec 16, 2024Updated last year
- ☆12Aug 6, 2024Updated 2 years ago