ttgump / spaVAE
Dependency-aware deep generative models for multitasking analysis of spatial genomics data
☆35Updated 8 months ago
Alternatives and similar repositories for spaVAE:
Users that are interested in spaVAE are comparing it to the libraries listed below
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆52Updated 9 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 8 months ago
- ☆42Updated 3 weeks ago
- ☆29Updated last month
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆54Updated 11 months ago
- ☆53Updated 11 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- ☆46Updated 2 weeks ago
- End-to-end analysis of spatial multi-omics data☆63Updated last week
- overview of spatial datasets☆71Updated last year
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 5 months ago
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated 2 weeks ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆52Updated 8 months ago
- ☆38Updated 2 years ago
- ☆96Updated 2 months ago
- ☆29Updated last year
- ☆51Updated last month
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆60Updated last year
- ☆57Updated 6 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆76Updated this week
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆31Updated this week
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆41Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- ☆36Updated last week