ttgump / spaVAELinks
Dependency-aware deep generative models for multitasking analysis of spatial genomics data
☆40Updated last year
Alternatives and similar repositories for spaVAE
Users that are interested in spaVAE are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- ☆34Updated 9 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆58Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- ☆51Updated 10 months ago
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆23Updated 8 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆77Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆16Updated 3 weeks ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 3 years ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆35Updated 10 months ago
- End-to-end analysis of spatial multi-omics data☆102Updated this week
- scGCN is a graph convolutional networks algorithm for knowledge transfer in single cell omics☆40Updated 3 years ago
- ☆21Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- ☆47Updated 6 months ago
- ☆51Updated 10 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆99Updated 11 months ago
- ☆106Updated 2 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆59Updated last year
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆35Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated 2 years ago
- ☆51Updated 2 weeks ago
- ☆129Updated 3 years ago
- ☆31Updated last year
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆52Updated 4 years ago
- ☆62Updated 2 years ago