pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.
☆28Feb 17, 2026Updated 3 months ago
Alternatives and similar repositories for pyGPCCA
Users that are interested in pyGPCCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically annotate cell types, consistently across samples.☆21Jun 1, 2026Updated last week
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- ☆15Jun 27, 2025Updated 11 months ago
- A python framework to run adaptive Markov state model (MSM) simulation on HPC resources☆17Aug 1, 2025Updated 10 months ago
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Get access to our MD data files.☆33Nov 22, 2023Updated 2 years ago
- IPython API to visualize MD-trajectories along projected trajectories inside a Jupyter notebook☆44Feb 14, 2019Updated 7 years ago
- All your Jupyter kernels, on all your machines, in one place.☆21Aug 2, 2024Updated last year
- ☆25Feb 28, 2023Updated 3 years ago
- 🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains☆27Jul 29, 2021Updated 4 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 9 months ago
- How to analyze molecular dynamics data with PyEMMA☆87May 29, 2019Updated 7 years ago
- Clustering by fast search and find of density peaks☆63Oct 5, 2020Updated 5 years ago
- This file includes the code I've written for the course Numerical Method in finance, Stochastic Calculus in Spring 2020.☆12May 13, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19May 12, 2026Updated 3 weeks ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆24Dec 9, 2024Updated last year
- ☆32Feb 24, 2022Updated 4 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆33Jun 1, 2026Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆110Jun 1, 2026Updated last week
- ☆11Apr 8, 2022Updated 4 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- Multi-omic single-cell optimal transport tools☆209Updated this week
- GP Sinkhorn Implementation, paper: https://www.mdpi.com/1099-4300/23/9/1134☆23May 1, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🚂 Python API for Emma's Markov Model Algorithms 🚂☆339Sep 11, 2023Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Read fcs files.☆11Nov 13, 2025Updated 6 months ago
- Correlation-based feature selection of Molecular Dynamics simulations☆29Mar 31, 2026Updated 2 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Official implementation of Neuronal Time-Invariant Representations (NeuPRINT), NeurIPS 2023☆10Mar 10, 2026Updated 2 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Instant search for Sphinx☆14Apr 5, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- single-cell latent diffusion model☆52Jun 1, 2026Updated last week
- Deprecated in favour of TopoMetry: https://github.com/davisidarta/topometry☆48Apr 7, 2026Updated 2 months ago
- The Monod package fits CME models to sequencing data.☆33Apr 24, 2026Updated last month
- ☆10Jul 10, 2023Updated 2 years ago
- ☆17May 21, 2025Updated last year