Alternatives and similar repositories for pyGPCCA

Users that are interested in pyGPCCA are comparing it to the libraries listed below

• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆34Updated 11 months ago
• OleksiiR / cSTAR_Nature
  Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.
  ☆15Updated 3 years ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• Genentech / sVAE
  ☆63Updated last year
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 3 weeks ago
• ZhangGroup-MITChemistry / DRAGON
  ☆12Updated last year
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated 3 months ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated last year
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆23Updated 2 months ago
• maclean-lab / RVAgene
  Recurrent Variational Auto gene encoder
  ☆20Updated 2 years ago
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated last week
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆61Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆49Updated this week
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆22Updated this week
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆21Updated 6 months ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆18Updated 2 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• open2c / polychrom
  Chromosome polymer simulations and in silico capture experiments
  ☆48Updated last month
• cellarium-ai / cellarium-ml
  Distributed single-cell data analysis.
  ☆31Updated 3 weeks ago
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆73Updated last year
• causalbench / causalbench
  ☆42Updated 7 months ago
• saezlab / progeny-py
  PROGENY Python implementation
  ☆12Updated 3 years ago