msmdev / pyGPCCALinks
pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.
☆21Updated 4 months ago
Alternatives and similar repositories for pyGPCCA
Users that are interested in pyGPCCA are comparing it to the libraries listed below
Sorting:
- CellBox: Interpretable Machine Learning for Perturbation Biology☆55Updated 2 years ago
- ☆63Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- Git Repo for simulating Boolean Models☆35Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆63Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- ☆19Updated 2 years ago
- ☆45Updated 2 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- ☆10Updated last year
- Modeling Latent Flow Structure using Hodge Decomposition☆13Updated 5 months ago
- Global Waddington-OT☆24Updated 5 months ago
- TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics☆123Updated last year
- Functional and Learnable Cell dynamicS☆17Updated 3 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆28Updated 2 years ago
- Deep exponential families for single-cell data.☆20Updated 9 months ago
- Tutorials on using latest dynamo package☆24Updated 3 weeks ago
- ☆10Updated last year
- Code for pmVAE model, seen in ICML CompBio '21☆12Updated last year
- ☆15Updated 3 weeks ago
- Simulating single-cell data using gene regulatory networks 📠☆75Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated last month
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Conditional out-of-distribution prediction☆63Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 6 months ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago