Alternatives and similar repositories for pyGPCCA

Users that are interested in pyGPCCA are comparing it to the libraries listed below

• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated 2 years ago
• Genentech / sVAE
  ☆63Updated 2 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆41Updated 2 years ago
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆35Updated last year
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated last week
• causalbench / causalbench
  ☆45Updated last month
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 5 months ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• zsteve / gWOT
  Global Waddington-OT
  ☆24Updated 4 months ago
• zsteve / StationaryOT
  Dynamic inference from single-cell snapshots by optimal transport
  ☆19Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 2 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆142Updated 9 months ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆17Updated last year
• dynverse / dyngen
  Simulating single-cell data using gene regulatory networks 📠
  ☆75Updated last year
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• KrishnaswamyLab / TrajectoryNet
  TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics
  ☆120Updated 11 months ago
• KrishnaswamyLab / Cell-Dynamics-Pipeline
  ☆10Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 3 weeks ago
• kazumits / ddhodge
  Modeling Latent Flow Structure using Hodge Decomposition
  ☆12Updated 4 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 10 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated 2 years ago
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆27Updated 2 years ago
• causalbench / causalbench-starter
  Starter repository for submissions to the CausalBench challenge for gene-gene graph inference from genetic perturbation experiments.
  ☆31Updated 2 years ago
• ratschlab / pmvae
  Code for pmVAE model, seen in ICML CompBio '21
  ☆12Updated last year
• Teichlab / celcomen
  ☆15Updated 3 weeks ago
• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 3 years ago