pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.
☆26Feb 17, 2026Updated last week
Alternatives and similar repositories for pyGPCCA
Users that are interested in pyGPCCA are comparing it to the libraries listed below
Sorting:
- Automatically annotate cell types, consistently across samples.☆19Updated this week
- Read fcs files.☆12Nov 13, 2025Updated 3 months ago
- Helper function for Markov State Models☆11Jun 25, 2024Updated last year
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 3 years ago
- Get access to our MD data files.☆31Nov 22, 2023Updated 2 years ago
- Extension of dynamax repo to cases with continuous-time dynamics with measurements sampled at possibly irregular discrete times. Allows …☆20Feb 18, 2026Updated last week
- ☆14Updated this week
- The Monod package fits CME models to sequencing data.☆33Jan 28, 2026Updated last month
- ☆15Jun 27, 2025Updated 8 months ago
- ☆13Jul 28, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆23Sep 29, 2025Updated 5 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 5 months ago
- All your Jupyter kernels, on all your machines, in one place.☆21Aug 2, 2024Updated last year
- ☆17Aug 2, 2022Updated 3 years ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆106Feb 18, 2026Updated last week
- Modeling Latent Flow Structure using Hodge Decomposition☆16Mar 13, 2025Updated 11 months ago
- single-cell latent diffusion model☆40Feb 16, 2026Updated last week
- CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.☆45Mar 6, 2023Updated 2 years ago
- ☆18Aug 14, 2017Updated 8 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 6 months ago
- A python framework to run adaptive Markov state model (MSM) simulation on HPC resources☆18Aug 1, 2025Updated 6 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- Web application demonstrating 3D modeling of spatial transcriptomics☆22Dec 9, 2024Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- 🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains☆27Jul 29, 2021Updated 4 years ago
- GP Sinkhorn Implementation, paper: https://www.mdpi.com/1099-4300/23/9/1134☆23May 1, 2022Updated 3 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated 11 months ago
- ☆25Feb 28, 2023Updated 3 years ago
- ☆33Jan 6, 2026Updated last month
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Branching Gaussian process☆30May 14, 2023Updated 2 years ago
- Type-safe, distributed orchestration of agents, ML pipelines, and real-time inference — in pure Python with async/await.☆73Updated this week
- Multi-omic single-cell optimal transport tools☆190Updated this week
- Automated Cell Toolkit☆24Oct 15, 2025Updated 4 months ago
- Tutorials on using latest dynamo package☆26Dec 21, 2025Updated 2 months ago
- Pipeline to analyse ChIP-Rx data, i.e ChIP-Seq with reference exogenous genome spike-in normalization☆15Sep 18, 2025Updated 5 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆29Jan 1, 2025Updated last year