conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
☆29Feb 16, 2024Updated 2 years ago
Alternatives and similar repositories for conST
Users that are interested in conST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆68Nov 6, 2024Updated last year
- ☆23Dec 8, 2023Updated 2 years ago
- ☆154Mar 19, 2024Updated 2 years ago
- ☆15Aug 9, 2023Updated 2 years ago
- ☆13Feb 15, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆46May 31, 2024Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆83Mar 5, 2022Updated 4 years ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Mar 31, 2023Updated 3 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆12Mar 1, 2025Updated last year
- ☆41Dec 4, 2023Updated 2 years ago
- SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph con…☆260Feb 9, 2026Updated 2 months ago
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Aug 11, 2023Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆28Mar 11, 2025Updated last year
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identify spatial domain☆90May 29, 2025Updated 10 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated 2 years ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 9 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- Single-cell Graph Cuts Optimization☆16Apr 27, 2024Updated last year
- ☆31Aug 2, 2023Updated 2 years ago
- ☆54Apr 26, 2022Updated 3 years ago
- Multi-Layer Network Model leverages identification of spatial domains from spatial transcriptomics data☆13Aug 25, 2024Updated last year
- ☆130Jun 10, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Jun 27, 2025Updated 9 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆78May 24, 2024Updated last year
- ☆19Jul 30, 2024Updated last year
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆25Dec 19, 2024Updated last year
- ☆10Jun 5, 2021Updated 4 years ago
- ☆16Mar 18, 2025Updated last year
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆51Apr 28, 2023Updated 2 years ago
- A Transformer Model Exploiting Histology Images and Spatial Gene Expression☆22Mar 18, 2025Updated last year
- Code for the spatialLIBD R/Bioconductor package and shiny app☆112Mar 27, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆53Apr 1, 2021Updated 5 years ago
- ☆40Nov 17, 2022Updated 3 years ago
- PyTorch implementation of HisToGene☆54Nov 30, 2021Updated 4 years ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆102Mar 28, 2024Updated 2 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆244Updated this week
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago