JinmiaoChenLab / SpatialGlueLinks
SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
☆71Updated last year
Alternatives and similar repositories for SpatialGlue
Users that are interested in SpatialGlue are comparing it to the libraries listed below
Sorting:
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Spatial-Linked Alignment Tool☆89Updated 10 months ago
- ☆60Updated last year
- End-to-end analysis of spatial multi-omics data☆95Updated last week
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆47Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages☆24Updated last year
- Identify spatial domain☆86Updated 5 months ago
- ☆30Updated 2 years ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 3 years ago
- ☆63Updated last year
- ☆125Updated 3 years ago
- overview of spatial datasets☆76Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆96Updated 8 months ago
- ☆50Updated last month
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- Reproducing the experiments of the DestVI paper☆21Updated 3 years ago
- ☆138Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆123Updated 5 months ago
- Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)☆56Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 8 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆67Updated this week
- ☆60Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆122Updated 7 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆76Updated 3 years ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆63Updated 2 weeks ago
- Cell clustering for spatial transcriptomics data with graph neural network☆64Updated 2 years ago