scverse / simple-scviLinks
Simple scVI implementation
☆12Updated this week
Alternatives and similar repositories for simple-scvi
Users that are interested in simple-scvi are comparing it to the libraries listed below
Sorting:
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- ☆45Updated 2 months ago
- spatial transcriptome, single cell☆70Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆51Updated last week
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- ☆63Updated 2 years ago
- ☆15Updated 2 months ago
- ☆102Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 2 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- ☆84Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆67Updated 2 years ago
- ☆35Updated last week
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30Updated 4 months ago
- Conditional out-of-distribution prediction☆63Updated last year
- Test genes for Spatial Variation☆14Updated 9 months ago
- ☆61Updated last year
- a dataloader to work with large single cell datasets from lamindb☆29Updated this week
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- ☆56Updated last year
- Invariant Representation learning☆18Updated last year
- ☆26Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- ☆46Updated last year