Alternatives and similar repositories for simple-scvi

Users that are interested in simple-scvi are comparing it to the libraries listed below

• zcang / SpaOTsc
  ☆45Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆18Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated 2 years ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• theislab / inVAE
  Invariant Representation learning
  ☆17Updated last year
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆62Updated last week
• theislab / scTab
  ☆59Updated 10 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆48Updated 5 months ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 6 months ago
• Spencerfar / LatentVelo
  ☆24Updated last year
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated last year
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• welch-lab / pyliger
  Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
  ☆30Updated last month
• Genentech / sVAE
  ☆63Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆61Updated last year
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆36Updated this week
• Teichlab / celcomen
  ☆15Updated 3 weeks ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆44Updated this week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆67Updated 2 years ago
• brianpenghe / python-genomics
  A set of files to do genomics analysis on python
  ☆18Updated last month
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 6 months ago
• YosefLab / velovi
  ☆40Updated last week
• dpeerlab / ENVI
  ☆48Updated last month
• bowang-lab / DeepVelo
  ☆47Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• theislab / prophet
  ☆34Updated 2 months ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆54Updated last week
• nitzanlab / biolord
  ☆80Updated 11 months ago