Simple scVI implementation
☆12Mar 16, 2026Updated this week
Alternatives and similar repositories for simple-scvi
Users that are interested in simple-scvi are comparing it to the libraries listed below
Sorting:
- Terminal-Bench-Science: Evaluating AI Agents on Complex Real-World Scientific Workflows in the Terminal☆41Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 8 months ago
- ☆15Jun 27, 2025Updated 8 months ago
- Matplotlib style for scientific publications☆14Updated this week
- Automatically annotate cell types, consistently across samples.☆19Updated this week
- Visualising data frames as funky heatmaps 📊, the Python implementation☆24Feb 6, 2025Updated last year
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆25Oct 21, 2025Updated 5 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- ☆24Oct 6, 2025Updated 5 months ago
- Single-cell perturbation analysis☆295Updated this week
- Cookiecutter template for scverse☆88Updated this week
- ☆15Nov 24, 2025Updated 3 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- ☆33Feb 26, 2025Updated last year
- Single-cell spatial omics analysis that makes you happy!☆52Updated this week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Python API and Jupyter widget for Vitessce☆62Feb 12, 2026Updated last month
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆60Updated this week
- Pytorch implementation of scDeepCluster for Single Cell RNA-seq data☆34Jul 10, 2024Updated last year
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25May 14, 2023Updated 2 years ago
- 命例☆10Sep 27, 2018Updated 7 years ago
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆43Jan 30, 2026Updated last month
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated last year
- Annotated sequence data☆11Feb 2, 2025Updated last year
- A set of files to do genomics analysis on python☆18Jun 5, 2025Updated 9 months ago
- A simulator for single-cell expression data guided by gene regulatory networks☆75May 8, 2024Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 10 months ago
- Code for Estimating Multi-cause Treatment Effects via Single-cause Perturbation (NeurIPS 2021)☆14Jan 5, 2022Updated 4 years ago
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 4 months ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 9 months ago
- ☆15Dec 18, 2024Updated last year
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- ☆21Apr 16, 2024Updated last year
- Package for heterogeneous causal effects in the presence of imperfect compliance (e.g., instrumental variables, fuzzy regression disconti…☆18Mar 6, 2024Updated 2 years ago
- ☆34Jan 6, 2026Updated 2 months ago
- This project looks at creating a controlled vocabulary for DICOM Pt 6 Data Dictionary with a focus on CS code strings.☆12Jan 9, 2026Updated 2 months ago
- Clinical data for the TCGA PanCancer Atlas☆17Jul 12, 2019Updated 6 years ago
- Discover grants, fellowships, cloud credits, and research funding for PhDs, postdocs, OSS maintainers, and indie developers.☆33Nov 18, 2025Updated 4 months ago
- ☆47Jan 28, 2026Updated last month