KerenLab / CellSighter
☆28Updated 9 months ago
Related projects: ⓘ
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆22Updated 4 months ago
- ☆12Updated last month
- Interactive visualization of spatial omics data☆36Updated this week
- Piecewise alignment for layers of mosaics☆18Updated this week
- QuPath extension to interactively align images☆19Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Integrated pipeline for multiplexed image analysis☆72Updated 3 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆43Updated last month
- QuPath extension for Cellsparse☆14Updated 2 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated last year
- Development of PICASSO plugin for napari☆12Updated last year
- A plugin to visualise 3D spatial single cell omics☆21Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆72Updated 3 weeks ago
- comseg☆14Updated 3 weeks ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆43Updated 6 months ago
- ☆20Updated last year
- ☆16Updated 5 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆27Updated 4 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆35Updated 2 months ago
- ☆35Updated this week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆16Updated last week
- Multiple-choice microscopy pipeline☆102Updated 2 weeks ago
- ☆35Updated last week
- ☆29Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆21Updated 11 months ago
- ☆33Updated 5 months ago
- Raw format to OME-TIFF converter☆46Updated 2 months ago
- ☆21Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated 3 months ago
- ☆14Updated 2 years ago