☆38Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for CellSighter
Users that are interested in CellSighter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis items☆19Jul 17, 2026Updated 3 weeks ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆108Jan 7, 2026Updated 7 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆44Jun 3, 2026Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- ☆19Apr 5, 2024Updated 2 years ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆23Apr 1, 2025Updated last year
- ☆30Oct 4, 2024Updated last year
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Aug 16, 2024Updated last year
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Jul 30, 2026Updated last week
- Command-line client for Fractal☆49Aug 3, 2026Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆48Jul 16, 2024Updated 2 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated last month
- MiC is an ImageJ plugin to compare segmentation masks☆20Jul 16, 2026Updated 3 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- Interactive visualization of spatial omics data☆88Aug 1, 2026Updated last week
- ☆24May 16, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 8 months ago
- ☆72Jan 18, 2023Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆24Jul 22, 2026Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆90Aug 3, 2026Updated last week
- ☆29Jan 31, 2026Updated 6 months ago
- Main tasks for the Fractal analytics platform☆27Jul 23, 2026Updated 2 weeks ago
- ☆26Jun 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆33May 2, 2025Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- ☆15Jul 29, 2022Updated 4 years ago
- Measurement control and analysis for super-resolution localization fluorescence microscopy☆15Feb 6, 2018Updated 8 years ago
- An R package for handling and analysing imaging mass cytometry data☆33May 19, 2026Updated 2 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 7 months ago