KerenLab / CellSighterLinks
☆34Updated last year
Alternatives and similar repositories for CellSighter
Users that are interested in CellSighter are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆29Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Interactive visualization of spatial omics data☆70Updated last week
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- The official QuPath extension for InstanSeg☆26Updated this week
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- comseg☆24Updated 8 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆95Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- rna2seg☆17Updated 5 months ago
- Framework for image and flow cytometry analysis☆30Updated 2 weeks ago
- QuPath extension to interactively align images☆25Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- ☆73Updated last week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- ☆27Updated 2 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated last year
- 3D segmentation for cells and organoids of 3D multichannel images☆24Updated 4 months ago
- ☆18Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 3 months ago