Alternatives and similar repositories for CellSighter:

Users that are interested in CellSighter are comparing it to the libraries listed below

• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 2 weeks ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆48Updated this week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated 2 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆80Updated 3 months ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆38Updated 7 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆49Updated 2 weeks ago
• fish-quant / ComSeg
  comseg
  ☆18Updated last week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated 10 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆85Updated 3 weeks ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆14Updated 2 months ago
• tanlabcode / CelloType
  ☆28Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆31Updated 9 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆21Updated 2 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆18Updated 6 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated 2 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• ElementoLab / utag
  ☆34Updated 10 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆22Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆49Updated last week
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆10Updated last year
• nolanlab / REDSEA
  ☆17Updated 10 months ago
• scverse / spatialdata-io
  ☆48Updated this week
• saeyslab / harpy
  https://harpy.readthedocs.io/en/latest/
  ☆15Updated this week
• giovp / spatialdata-sandbox
  ☆11Updated last week
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆120Updated 2 weeks ago
• HiDiHlabs / ssam
  ☆27Updated 4 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆50Updated 11 months ago
• angelolab / Nimbus
  ☆16Updated 6 months ago
• UFISH-Team / U-FISH
  Deep learning based spot detection for FISH images.
  ☆21Updated 6 months ago