KerenLab / CellSighterLinks
☆33Updated last year
Alternatives and similar repositories for CellSighter
Users that are interested in CellSighter are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Piecewise alignment for layers of mosaics☆28Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Interactive visualization of spatial omics data☆64Updated last week
- A pipeline to transform images into valuable analysis items☆13Updated last month
- comseg☆24Updated 5 months ago
- QuPath extension for Cellsparse☆19Updated 2 months ago
- The official QuPath extension for InstanSeg☆24Updated 2 weeks ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Multiple-choice microscopy pipeline☆135Updated last week
- multimodal whole slide image registration in a graph structure☆90Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Framework for image and flow cytometry analysis☆28Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- rna2seg☆17Updated 2 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Accurate and efficient spot detection for microscopy data☆92Updated 3 weeks ago
- QuPath extension to interactively align images☆24Updated last month
- 3D segmentation for cells and organoids of 3D multichannel images☆18Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆52Updated 5 months ago
- ☆18Updated last year