☆19Apr 5, 2024Updated 2 years ago
Alternatives and similar repositories for REDSEA
Users that are interested in REDSEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆76Nov 4, 2024Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Sep 26, 2021Updated 4 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 6 months ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Aug 11, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆108Updated this week
- R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data☆23Jun 17, 2021Updated 5 years ago
- An R package for handling and analysing imaging mass cytometry data☆33May 19, 2026Updated 4 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Sep 2, 2026Updated 2 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆14Aug 3, 2023Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Read fcs files.☆11Nov 13, 2025Updated 10 months ago
- ☆38Dec 13, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A pixel classification based multiplexed image segmentation pipeline☆108Dec 5, 2023Updated 2 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- Spatial Single-Cell Analysis Toolkit☆116Sep 9, 2026Updated last week
- ☆62Jan 9, 2026Updated 8 months ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- ☆45Jun 3, 2026Updated 3 months ago
- CODEX data processing code☆13Jul 1, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Piecewise alignment for layers of mosaics☆64Sep 7, 2026Updated last week
- ☆12May 21, 2025Updated last year
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- R package for visualization of highly multiplexed imaging data☆37Aug 25, 2026Updated 3 weeks ago
- Deep Learning Library for Single Cell Analysis☆480Jun 4, 2026Updated 3 months ago
- Imaging Mass Cytometry (IMC) file type support for napari☆13Jul 8, 2026Updated 2 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Updated this week
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A toolkit for processing multiplexed tissue images☆68Aug 31, 2026Updated 2 weeks ago
- Build contrasts for models defined with formulaic☆13Updated this week
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 3 months ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆71Sep 19, 2025Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- ☆12Jul 13, 2025Updated last year