nolanlab / REDSEALinks
☆18Updated last year
Alternatives and similar repositories for REDSEA
Users that are interested in REDSEA are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆62Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆28Updated 10 months ago
- Interactive visualization of spatial omics data☆64Updated this week
- ☆66Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- Python API and Jupyter widget for Vitessce☆50Updated last week
- ☆34Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- QuPath extension to interactively align images☆24Updated last month
- Segmentation error aware clustering for multiplexed imaging☆18Updated 6 months ago
- ☆27Updated 9 months ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆85Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆99Updated last year
- ☆38Updated last year
- Optimal gating strategies for flow and mass cytometry.☆13Updated 3 months ago
- A pipeline to transform images into valuable analysis items☆13Updated last month
- ☆17Updated 2 months ago
- comseg☆24Updated 6 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year