angelolab / ark-analysis
Integrated pipeline for multiplexed image analysis
☆85Updated this week
Alternatives and similar repositories for ark-analysis:
Users that are interested in ark-analysis are comparing it to the libraries listed below
- Spatial Single-Cell Analysis Toolkit☆87Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆41Updated 8 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆34Updated 10 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆51Updated 2 months ago
- Multiple-choice microscopy pipeline☆125Updated 3 weeks ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆77Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆29Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆62Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆30Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆112Updated last week
- ☆31Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆178Updated this week
- Interactive visualization of spatial omics data☆52Updated last week
- ☆28Updated 5 months ago
- comseg☆19Updated last month
- Super-resolved spatial transcriptomics by deep data fusion☆72Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆51Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆24Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated this week
- ☆34Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 8 months ago
- Interoperability between SpatialData and the Xenium Explorer☆20Updated 8 months ago
- CODEX data processing code☆12Updated 2 months ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- A pixel classification based multiplexed image segmentation pipeline☆93Updated last year
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆55Updated 3 weeks ago
- ☆55Updated last week
- ☆52Updated last week
- ☆14Updated 3 years ago