angelolab / ark-analysisLinks
Integrated pipeline for multiplexed image analysis
☆93Updated 4 months ago
Alternatives and similar repositories for ark-analysis
Users that are interested in ark-analysis are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆44Updated last year
- Multiple-choice microscopy pipeline☆135Updated last week
- Interactive visualization of spatial omics data☆64Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆36Updated last year
- comseg☆24Updated 5 months ago
- ☆33Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆62Updated 2 weeks ago
- A pixel classification based multiplexed image segmentation pipeline☆99Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Accessible and interoperable whole slide image analysis☆124Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆82Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆212Updated this week
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- ☆38Updated last year
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆13Updated last month
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- ☆65Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆34Updated last week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆74Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆20Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 10 months ago
- ☆18Updated last year
- ☆27Updated 9 months ago