Integrated pipeline for multiplexed image analysis
☆107Jan 7, 2026Updated 5 months ago
Alternatives and similar repositories for ark-analysis
Users that are interested in ark-analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Jun 25, 2026Updated last week
- A toolkit for processing multiplexed tissue images☆69May 25, 2026Updated last month
- ☆18Apr 5, 2024Updated 2 years ago
- ☆38Dec 13, 2023Updated 2 years ago
- Multiple-choice microscopy pipeline☆154Jun 16, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆99Jun 8, 2026Updated 3 weeks ago
- ☆34Oct 10, 2025Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 3 weeks ago
- An introduction to deepcell and deep learning☆155Oct 21, 2024Updated last year
- Probabilistic topic model for identifying cellular micro-environments.☆28Jul 6, 2023Updated 2 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆381Jun 24, 2026Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆175May 14, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 3 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 4 months ago
- Deep Learning Library for Single Cell Analysis☆476Jun 4, 2026Updated last month
- A pixel classification based multiplexed image segmentation pipeline☆106Dec 5, 2023Updated 2 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 3 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆73Nov 4, 2024Updated last year
- Single-cell spatial omics analysis that makes you happy!☆69Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆56Nov 13, 2025Updated 7 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bayesian Segmentation of Spatial Transcriptomics Data☆207Jun 26, 2026Updated last week
- ☆44May 11, 2026Updated last month
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆67Jun 15, 2026Updated 2 weeks ago
- A performant scientific image visualization system.☆36Jun 24, 2026Updated last week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 3 months ago
- Spatial Single Cell Analysis in Python☆580Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆44Jun 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 11 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆180Jun 16, 2026Updated 2 weeks ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 7 months ago
- ☆19May 12, 2026Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆283Jun 24, 2026Updated last week