haesleinhuepf / the-segmentation-gameLinks
Gamified image segmentation quality estimation
☆17Updated last month
Alternatives and similar repositories for the-segmentation-game
Users that are interested in the-segmentation-game are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- Process images using SimpleITK in napari☆21Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 3 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆16Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated this week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- ☆23Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl …☆33Updated 2 months ago
- ☆50Updated last month
- ☆33Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- dask empowered fast4dreg☆11Updated 7 months ago
- Optimize image processing workflows in napari☆17Updated last month
- QuPath extension for Cellsparse☆18Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 2 months ago
- A 3D interactivity toolbox for napari☆35Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago