BiAPoL / napari-clusters-plotterLinks
A napari plugin for clustering objects according to their properties.
☆87Updated last week
Alternatives and similar repositories for napari-clusters-plotter
Users that are interested in napari-clusters-plotter are comparing it to the libraries listed below
Sorting:
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- ☆51Updated 5 months ago
- StarDist plugin for napari☆39Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 5 months ago
- Track and lineage visualization with btrack and Napari☆46Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆168Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆56Updated 11 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 2 months ago
- ☆34Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 5 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆102Updated this week
- ☆23Updated 3 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- Resources for teaching/preparing to teach bioimage analysis☆58Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆86Updated 3 weeks ago
- ☆85Updated 6 months ago
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 9 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- ☆24Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆148Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 7 months ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆69Updated 3 weeks ago
- A template repo used to make new napari plugins☆27Updated last month
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆84Updated last week
- Accurate and efficient spot detection for microscopy data☆100Updated this week