BiAPoL / napari-clusters-plotter
A napari plugin for clustering objects according to their properties.
☆82Updated this week
Alternatives and similar repositories for napari-clusters-plotter:
Users that are interested in napari-clusters-plotter are comparing it to the libraries listed below
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- ☆47Updated 5 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 4 months ago
- ☆23Updated 6 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Lectures for a napari training course☆50Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Browse your OMERO database from within napari.☆36Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆55Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- ☆38Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- ☆21Updated last year
- ☆29Updated 11 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated 2 weeks ago
- Interactive visualization and sharing of cell tracking data in the browser☆23Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆78Updated last week
- 1d plotting in napari-based canvas.☆26Updated last week
- Resources for teaching/preparing to teach bioimage analysis☆54Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year