CellProfiling / pipexLinks
A pipeline to transform images into valuable analysis items
☆13Updated this week
Alternatives and similar repositories for pipex
Users that are interested in pipex are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Interactive visualization of spatial omics data☆58Updated last week
- ☆32Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- comseg☆20Updated 3 months ago
- CODEX data processing code☆12Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆79Updated 2 months ago
- ☆62Updated last week
- ☆13Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A toolkit for processing multiplexed tissue images☆62Updated this week
- ☆29Updated last year
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- ☆35Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- ☆16Updated 3 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- ☆28Updated 7 months ago