Alternatives and similar repositories for pipex

Users that are interested in pipex are comparing it to the libraries listed below

• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆96Updated 5 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆67Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆37Updated last year
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 2 weeks ago
• KerenLab / CellSighter
  ☆34Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 4 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆99Updated 2 months ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆45Updated last year
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆63Updated last month
• fish-quant / ComSeg
  comseg
  ☆24Updated 7 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated this week
• hubmapconsortium / codex-pipeline
  CODEX data processing code
  ☆12Updated 2 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated last month
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆75Updated last week
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆51Updated last week
• scverse / spatialdata-io
  ☆69Updated this week
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆226Updated this week
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆46Updated 3 months ago
• scverse / spatialdata-notebooks
  ☆57Updated this week
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated 11 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆38Updated this week
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆130Updated last week
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆16Updated last week
• angelolab / Nimbus
  ☆18Updated 2 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆58Updated last year
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated 2 years ago
• yuqiyuqitan / SPACEc
  ☆47Updated 2 months ago