haesleinhuepf / napari-workflowsView external linksLinks
☆13Aug 16, 2024Updated last year
Alternatives and similar repositories for napari-workflows
Users that are interested in napari-workflows are comparing it to the libraries listed below
Sorting:
- ☆15Jul 29, 2022Updated 3 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated 9 months ago
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 4 months ago
- Main tasks for the Fractal analytics platform☆23Feb 5, 2026Updated last week
- ☆25May 16, 2023Updated 2 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 5 months ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 4 months ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Web Image Processing Pipeline (WIPP)☆25Dec 19, 2025Updated last month
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Mar 14, 2025Updated 11 months ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated 6 months ago
- ☆13Apr 27, 2020Updated 5 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Dec 6, 2022Updated 3 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 3 years ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 7 months ago
- A napari plugin for zarr backed OME-NGFF images☆43Jan 19, 2026Updated 3 weeks ago
- Script that registers Histology slices to volumetric image data☆11Oct 4, 2023Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- 😇A curated list of links and resources for Fair ML and Data Ethics☆18May 31, 2022Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 2 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- Pytorch implementation for "Iterative Human and Automated Identification of Wildlife Images" (Nature -Machine Intelligence, 2021)☆19Nov 3, 2021Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- Fractal backend☆18Updated this week
- Multiple file format reading directly into napari using pure Python☆39Oct 15, 2025Updated 4 months ago
- GPU-accelerated Image Processing library for Python☆53Feb 2, 2026Updated last week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- ☆18Feb 5, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 4 years ago
- Linking napari layers with Matplotlib plots☆43Feb 2, 2026Updated last week
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆105Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 9 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Jan 28, 2026Updated 2 weeks ago