β71Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for stellar
Users that are interested in stellar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Jun 23, 2026Updated last month
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clusteringβ12Aug 3, 2023Updated 2 years ago
- β44May 11, 2026Updated 2 months ago
- β12Mar 22, 2023Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β41May 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- β62Jan 9, 2026Updated 6 months ago
- Minimum Information about Tissue Imagingβ21Oct 18, 2023Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β289Jul 15, 2026Updated last week
- Spatial Single Cell Analysis in Pythonβ585Updated this week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ57May 20, 2022Updated 4 years ago
- Spatial Single-Cell Analysis Toolkitβ113Mar 11, 2026Updated 4 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"β13Mar 3, 2023Updated 3 years ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.β259Updated this week
- Regulatory networks with Direct Information in pythonβ42Mar 9, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- https://sparrow-pipeline.readthedocs.io/en/latest/β34Updated this week
- A performant scientific image visualization system.β36Jul 16, 2026Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cβ¦β17Sep 26, 2021Updated 4 years ago
- β29Jan 4, 2024Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ68Mar 14, 2024Updated 2 years ago
- β36Oct 10, 2025Updated 9 months ago
- β38Dec 13, 2023Updated 2 years ago
- spatial transcriptome, single cellβ76Mar 18, 2023Updated 3 years ago
- β29Nov 21, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available β’ AdRun AI, ML, and HPC workloads on powerful cloud GPUsβwithout limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ35Apr 9, 2026Updated 3 months ago
- Spatial alignment of single cell transcriptomic data.β370Jul 1, 2025Updated last year
- Code used to benchmark Xeniumβ86Apr 10, 2026Updated 3 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial β¦β472Jan 22, 2026Updated 6 months ago
- β29Apr 26, 2024Updated 2 years ago
- β11Mar 2, 2021Updated 5 years ago
- β23Mar 22, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Dataβ208Jun 26, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Statistical analysis for spatial omics dataβ11Jul 30, 2022Updated 3 years ago
- Interoperability between SpatialData and the Xenium Explorerβ26Jul 31, 2024Updated last year
- Configure Vitessce using existing Scverse plotting APIsβ25Jul 17, 2026Updated last week
- Tool to create images and configuration files for Minerva-Storyβ16Updated this week
- Learning cell communication from spatial graphs of cellsβ120Jan 15, 2024Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics dataβ28Jan 6, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experimentsβ124Dec 8, 2022Updated 3 years ago