☆72Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for stellar
Users that are interested in stellar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 3 years ago
- ☆44May 11, 2026Updated 3 months ago
- ☆12Mar 22, 2023Updated 3 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆62Jan 9, 2026Updated 7 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- Spatial Single Cell Analysis in Python☆589Updated this week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆57May 20, 2022Updated 4 years ago
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 5 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆13Mar 3, 2023Updated 3 years ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆263Updated this week
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- https://sparrow-pipeline.readthedocs.io/en/latest/☆34Updated this week
- A performant scientific image visualization system.☆36Aug 5, 2026Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆29Jan 4, 2024Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- ☆37Oct 10, 2025Updated 10 months ago
- ☆38Dec 13, 2023Updated 2 years ago
- spatial transcriptome, single cell☆76Mar 18, 2023Updated 3 years ago
- ☆29Nov 21, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Aug 5, 2026Updated last week
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆477Jan 22, 2026Updated 6 months ago
- ☆30Apr 26, 2024Updated 2 years ago
- ☆11Mar 2, 2021Updated 5 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆209Jul 31, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 4 years ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- Configure Vitessce using existing Scverse plotting APIs☆25Updated this week
- Tool to create images and configuration files for Minerva-Story☆16Jul 20, 2026Updated 3 weeks ago
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆124Dec 8, 2022Updated 3 years ago