β71Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for stellar
Users that are interested in stellar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics π₯π¬β¨β56Jun 25, 2025Updated 11 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clusteringβ12Aug 3, 2023Updated 2 years ago
- β44May 11, 2026Updated last month
- β29Jan 4, 2024Updated 2 years ago
- β12Mar 22, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCβ¦β280Jun 1, 2026Updated last week
- β61Jan 9, 2026Updated 5 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/β33Updated this week
- Spatial Single Cell Analysis in Pythonβ577Updated this week
- Spatial Single-Cell Analysis Toolkitβ112Mar 11, 2026Updated 3 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationβ54May 20, 2022Updated 4 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"β12Mar 3, 2023Updated 3 years ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.β253Updated this week
- A performant scientific image visualization system.β36Jun 4, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Regulatory networks with Direct Information in pythonβ41Mar 9, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cβ¦β17Sep 26, 2021Updated 4 years ago
- β39Dec 13, 2023Updated 2 years ago
- spatial transcriptome, single cellβ75Mar 18, 2023Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communicationsβ66Mar 14, 2024Updated 2 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.β15Apr 30, 2026Updated last month
- Spatial alignment of single cell transcriptomic data.β368Jul 1, 2025Updated 11 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imagingβ14Jul 29, 2025Updated 10 months ago
- β29Apr 26, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial β¦β462Jan 22, 2026Updated 4 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information β¦β41May 7, 2024Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopyβ33Apr 9, 2026Updated 2 months ago
- β11Mar 2, 2021Updated 5 years ago
- β23Mar 22, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Dataβ206May 18, 2026Updated 3 weeks ago
- β28Nov 21, 2019Updated 6 years ago
- Interoperability between SpatialData and the Xenium Explorerβ26Jul 31, 2024Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics dataβ28Jan 6, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Learning cell communication from spatial graphs of cellsβ119Jan 15, 2024Updated 2 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomicsβ13Mar 1, 2025Updated last year
- Discovering novel cell types across heterogenous single-cell experimentsβ124Dec 8, 2022Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectoriesβ45Sep 5, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discoveryβ11Jan 28, 2026Updated 4 months ago
- An R package for performing cell typing in SMI and other single cell dataβ50May 1, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics dataβ87Nov 16, 2025Updated 6 months ago