☆71Jan 18, 2023Updated 3 years ago
Alternatives and similar repositories for stellar
Users that are interested in stellar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 9 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- ☆43Apr 1, 2026Updated last week
- ☆29Jan 4, 2024Updated 2 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆272Updated this week
- ☆60Jan 9, 2026Updated 3 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated 2 months ago
- Spatial Single Cell Analysis in Python☆560Apr 7, 2026Updated last week
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated last month
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆52May 20, 2022Updated 3 years ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆244Apr 7, 2026Updated last week
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- ☆37Dec 13, 2023Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆65Mar 14, 2024Updated 2 years ago
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆15Apr 3, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated this week
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 9 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆29Apr 26, 2024Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39May 7, 2024Updated last year
- ☆11Mar 2, 2021Updated 5 years ago
- ☆22Mar 22, 2023Updated 3 years ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- ☆28Nov 21, 2019Updated 6 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Learning cell communication from spatial graphs of cells☆116Jan 15, 2024Updated 2 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆12Mar 1, 2025Updated last year
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- An R package for performing cell typing in SMI and other single cell data☆49May 19, 2025Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 4 months ago