QI2lab / OPMLinks
Archived: control, reconstruction, and analysis code for oblique plane microscopy.
☆22Updated 2 months ago
Alternatives and similar repositories for OPM
Users that are interested in OPM are comparing it to the libraries listed below
Sorting:
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 7 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last month
- A napari plugin to analysis point spread functions.☆12Updated 2 months ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated last month
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- Adaptive Optics plugin for MicroManager☆12Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- Pure python/C++ micro-manager ecosystem☆36Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- ☆13Updated 5 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆42Updated last month
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Use ImageJ functionality from napari☆31Updated 2 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆73Updated this week
- Place to discuss the future design of a universal microscope hardware interface☆15Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- python tools for BigDataViewer☆22Updated 5 months ago
- ☆13Updated 4 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated this week
- ☆13Updated 5 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Denoising via adaptive binning.☆12Updated 11 months ago
- ImageJ convenience layer for N5☆17Updated 3 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated 3 weeks ago