QI2lab / OPMLinks
Archived: control, reconstruction, and analysis code for oblique plane microscopy.
☆22Updated 4 months ago
Alternatives and similar repositories for OPM
Users that are interested in OPM are comparing it to the libraries listed below
Sorting:
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated 2 weeks ago
- A napari plugin to analysis point spread functions.☆13Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- ☆13Updated 5 years ago
- python tools for BigDataViewer☆22Updated 7 months ago
- GDSC Single Molecule Light Microscopy ImageJ Plugins☆16Updated 2 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- my first baby steps with Napari☆10Updated 5 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆76Updated 3 weeks ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 3 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated 3 weeks ago
- Little OBjects Segmentation and Tracking EnviRonment☆9Updated 5 years ago
- Adaptive Optics plugin for MicroManager☆12Updated 3 years ago
- ☆10Updated 8 months ago
- ☆11Updated last month
- ☆13Updated 5 years ago
- Dataset EXploration & Processing☆32Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- navigate - open source light-sheet microscope controls☆37Updated last week
- Lattice light-sheet post-processing utility.☆29Updated 3 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆13Updated 2 weeks ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆21Updated 9 months ago
- MultiModal Big Image Data Sharing and Exploration☆16Updated 2 years ago