BodenmillerGroup / napari-imcView external linksLinks
Imaging Mass Cytometry (IMC) file type support for napari
☆12Oct 19, 2023Updated 2 years ago
Alternatives and similar repositories for napari-imc
Users that are interested in napari-imc are comparing it to the libraries listed below
Sorting:
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Feb 9, 2026Updated last week
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆67Jan 19, 2026Updated 3 weeks ago
- Tools to handle IMC data☆24Mar 31, 2022Updated 3 years ago
- An R package for handling and analysing imaging mass cytometry data☆29Jan 6, 2026Updated last month
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- ☆37Dec 13, 2023Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆34May 27, 2025Updated 8 months ago
- R based workflow for multiplexed imaging data☆36Feb 6, 2026Updated last week
- ☆11Updated this week
- Python package to generate random human-readable strings, e.g. project and experiment names☆11May 5, 2025Updated 9 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Updated this week
- A pixel classification based multiplexed image segmentation pipeline☆105Dec 5, 2023Updated 2 years ago
- ☆16May 13, 2022Updated 3 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 7 months ago
- Material for the MUDS Practical Data Science Training☆15Feb 1, 2021Updated 5 years ago
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Jul 14, 2023Updated 2 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- IMOD model files as pandas dataframes in Python☆12Jun 26, 2025Updated 7 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Code for the paper "Unlocking Slot Attention by Changing Optimal Transport Costs"☆13Sep 19, 2023Updated 2 years ago
- Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…☆19May 19, 2023Updated 2 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 25, 2025Updated 7 months ago
- Unofficial PyTorch implementation of Neural Additive Models (NAM) by Agarwal, et al.☆14May 30, 2021Updated 4 years ago
- ☆13Oct 17, 2021Updated 4 years ago
- The source code to the Website of www.ankicollab.com☆16Feb 7, 2026Updated last week
- R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.☆21May 21, 2025Updated 8 months ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Sep 19, 2025Updated 4 months ago
- Example package that uses shinytest to test application created by a function☆16Mar 29, 2018Updated 7 years ago
- R Markdown thesis template using the bookdown package☆12Dec 8, 2021Updated 4 years ago
- Train and visualise a latent variable model of moving objects.☆15Apr 28, 2020Updated 5 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Jun 9, 2025Updated 8 months ago