Imaging Mass Cytometry (IMC) file type support for napari
☆13Oct 19, 2023Updated 2 years ago
Alternatives and similar repositories for napari-imc
Users that are interested in napari-imc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for reading imaging mass cytometry (IMC) files☆18Updated this week
- CellProfiler plugins for multiplexed image analysis☆12Feb 16, 2021Updated 5 years ago
- A toolkit for processing multiplexed tissue images☆68Apr 6, 2026Updated last week
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- An R package for handling and analysing imaging mass cytometry data☆31Mar 30, 2026Updated 2 weeks ago
- R based workflow for multiplexed imaging data☆37Mar 20, 2026Updated 3 weeks ago
- A pixel classification based multiplexed image segmentation pipeline☆106Dec 5, 2023Updated 2 years ago
- R package for visualization of highly multiplexed imaging data☆35May 27, 2025Updated 10 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆71Nov 4, 2024Updated last year
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- ☆11Feb 24, 2026Updated last month
- Python package to generate random human-readable strings, e.g. project and experiment names☆11May 5, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The source code to the Website of www.ankicollab.com☆16Mar 29, 2026Updated 3 weeks ago
- Example package that uses shinytest to test application created by a function☆16Mar 29, 2018Updated 8 years ago
- ☆37Dec 13, 2023Updated 2 years ago
- ☆16May 13, 2022Updated 3 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- ☆14Apr 12, 2025Updated last year
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 2 months ago
- IMOD model files as pandas dataframes in Python☆12Jun 26, 2025Updated 9 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆13Aug 17, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s…☆19May 19, 2023Updated 2 years ago
- Jupyter-based tool for membrane segmentation manipulation☆10Jul 9, 2025Updated 9 months ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆69Sep 19, 2025Updated 7 months ago
- SBGN User Website and Developer Wiki (outdated version of the website)☆13Jan 20, 2023Updated 3 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Jun 25, 2025Updated 9 months ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated last month
- R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.☆21May 21, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R Markdown thesis template using the bookdown package☆12Dec 8, 2021Updated 4 years ago
- ☆18Apr 5, 2024Updated 2 years ago
- Cytometry dATa anALYsis Tools☆76Apr 11, 2026Updated last week
- Image processing toolbox for R☆76Oct 14, 2024Updated last year
- convert .kfb format whole slide images to .svs format image for further processing☆17Sep 19, 2020Updated 5 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- We're RLadies and we're from Bergen, Norway. Checkout the current info on meetup (https://www.meetup.com/rladies-bergen/)☆17May 23, 2024Updated last year