Alternatives and similar repositories for napari-imc

Users that are interested in napari-imc are comparing it to the libraries listed below

• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆108Updated 3 weeks ago
• scverse / spatialdata-io
  ☆88Updated this week
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆39Updated last year
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆75Updated this week
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆261Updated 3 weeks ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆35Updated last year
• EliHei2 / segger_dev
  a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…
  ☆83Updated 2 weeks ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆51Updated this week
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆95Updated 2 years ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆102Updated 3 weeks ago
• yuqiyuqitan / SPACEc
  ☆59Updated last month
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆86Updated 2 months ago
• HiDiHlabs / ssam
  ☆27Updated last year
• fish-quant / ComSeg
  comseg
  ☆24Updated 11 months ago
• MannLabs / scPortrait
  scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images
  ☆105Updated last week
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆67Updated 2 weeks ago
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆18Updated 7 months ago
• scverse / spatialdata-plot
  Static plotting for spatialdata
  ☆73Updated this week
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆132Updated 3 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆145Updated last week
• rockdeme / chrysalis
  Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
  ☆18Updated 7 months ago
• wollmanlab / JSTA
  ☆15Updated 3 years ago
• kharchenkolab / Baysor
  Bayesian Segmentation of Spatial Transcriptomics Data
  ☆201Updated last year
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆149Updated 2 weeks ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• ZhuangLab / MERFISH_analysis
  Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
  ☆50Updated 4 years ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆48Updated 2 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 2 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 2 months ago
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆34Updated 8 months ago