MiC is an ImageJ plugin to compare segmentation masks
☆19Jun 4, 2025Updated 11 months ago
Alternatives and similar repositories for MiC
Users that are interested in MiC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆68Feb 10, 2026Updated 3 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆20Feb 10, 2026Updated 3 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 4 years ago
- Modular, object-based analysis for ImageJ/Fiji☆16May 12, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆91Feb 5, 2026Updated 3 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 3 years ago
- Gamified image segmentation quality estimation☆19May 1, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated last week
- ☆22Aug 17, 2023Updated 2 years ago
- An ontology of imaging and related techniques and technologies, image processing and analysis, image data and formats, within bio- and ot…☆12May 4, 2026Updated 2 weeks ago
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 10 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Identification of persistent local patterns in spatial omics data☆17May 6, 2025Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆61May 14, 2026Updated last week
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- GPU-accelerated image processing in Matlab using CLIJ☆11Oct 30, 2021Updated 4 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 4 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Feb 15, 2022Updated 4 years ago
- ☆12Feb 5, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated last year
- ☆38Dec 13, 2023Updated 2 years ago
- The Java library to run Deep Learning models☆34May 14, 2026Updated last week
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 2 years ago
- Python package that uses colorspace-based segmentation to analyze histopathology images.☆13Feb 7, 2024Updated 2 years ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- ☆10Nov 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Image Deconvolution via Noise-Tolerant Self-Supervised Inversion☆30Sep 30, 2024Updated last year
- ☆14Jan 25, 2024Updated 2 years ago
- PyTextureAnalysis is a Python package for analyzing the texture of images. It includes functions for calculating local orientation, degre…☆31Sep 9, 2024Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- Segment Anything Model API☆112Feb 15, 2026Updated 3 months ago
- ☆12Jul 17, 2025Updated 10 months ago
- Cell tracking and segmentation software☆177May 14, 2026Updated last week