MultimodalImagingCenter / MiC
MiC is an ImageJ plugin to compare segmentation masks
☆17Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for MiC
- Guides and code for 3D nuclear instance segmentation☆19Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- A self-supervised denoising algorithm.☆24Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 3 weeks ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆21Updated 3 years ago
- ☆21Updated 2 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆20Updated 3 weeks ago
- ilastik plugin for napari☆13Updated 7 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated this week
- Process images using SimpleITK in napari☆19Updated last month
- A napari plugin for zarr backed OME-NGFF images☆28Updated 3 weeks ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- ☆10Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆14Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- napari plugin for trackastra☆12Updated last month
- StarDist plugin for napari☆36Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆57Updated this week