MultimodalImagingCenter / MiC
MiC is an ImageJ plugin to compare segmentation masks
☆17Updated 9 months ago
Alternatives and similar repositories for MiC:
Users that are interested in MiC are comparing it to the libraries listed below
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 weeks ago
- Process images using SimpleITK in napari☆20Updated 6 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 4 months ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 6 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- ☆23Updated 6 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated this week
- dask empowered fast4dreg☆11Updated 4 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- ☆10Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- 4D reconstruction of developmental trajectories using spherical harmonics☆21Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- ☆22Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 7 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 10 months ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last week
- Optimize image processing workflows in napari☆17Updated 2 years ago