☆37Oct 10, 2025Updated last year
Alternatives and similar repositories for Nimbus
Users that are interested in Nimbus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆45Jun 3, 2026Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆110Sep 18, 2026Updated last month
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆14Aug 3, 2023Updated 3 years ago
- Generate a spatial catalogue from multiplexed imaging data☆19Jun 12, 2025Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆11Dec 13, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility notebooks for resolVI manuscript☆14Apr 17, 2026Updated 6 months ago
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- ☆38Dec 13, 2023Updated 2 years ago
- Automatically annotate cell types, consistently across samples.☆30Oct 26, 2026Updated last week
- ☆73Jan 18, 2023Updated 3 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- ☆63Jan 9, 2026Updated 9 months ago
- ☆57Sep 2, 2026Updated 2 months ago
- ☆16May 24, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆117Jul 4, 2025Updated last year
- Electron-based multiplexed imaging viewer☆27Mar 12, 2024Updated 2 years ago
- Python API and Jupyter widget for Vitessce☆67Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆24Sep 30, 2026Updated last month
- VitaminP: a vision transformer-assisted multimodal integration network for pathology cell segmentation☆13Oct 14, 2026Updated 2 weeks ago
- A fully scalable robust image feature extraction library.☆30Updated this week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆36Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- ☆18Mar 18, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Training/Evaluation code for HoVer-NeXt☆19Aug 26, 2026Updated 2 months ago
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Updated this week
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- Foundation Model for Multiplex Spatial Proteomic Images☆213Jul 27, 2026Updated 3 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆18Oct 26, 2026Updated last week
- ☆21Oct 15, 2026Updated 2 weeks ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- ViT architecture with Mamba instead of transformer backbone☆17Dec 8, 2023Updated 2 years ago
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A spatial proteomics foundation model for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling…☆162Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆67Mar 14, 2024Updated 2 years ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- SpotSweeper-py: Python version of SpotSweeper package☆11Sep 6, 2026Updated last month
- Analysis framework for morphological profiling data☆14Updated this week
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 11 months ago
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago