fractal-analytics-platform / fractal-tasks-coreLinks
Main tasks for the Fractal analytics platform
☆22Updated last week
Alternatives and similar repositories for fractal-tasks-core
Users that are interested in fractal-tasks-core are comparing it to the libraries listed below
Sorting:
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆27Updated last week
- A napari plugin for zarr backed OME-NGFF images☆40Updated this week
- Command-line client for Fractal☆47Updated this week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last month
- ☆33Updated 6 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆54Updated last week
- ☆36Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆34Updated last week
- Browse your OMERO database from within napari.☆39Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆105Updated 3 weeks ago
- native Python dataclasses for the OME data model☆64Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated 4 months ago
- 1d plotting in napari-based canvas.☆25Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- dask empowered fast4dreg☆15Updated 11 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 8 months ago
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆36Updated this week
- GIve easy, high-level access to ome-zarr fileset☆21Updated last month
- Pydantic models for OME-NGFF☆24Updated 2 months ago
- python tools for BigDataViewer☆22Updated 10 months ago
- Cookiecutter for napari plugins☆72Updated last year
- A 3D interactivity toolbox for napari☆37Updated 4 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆40Updated 2 weeks ago
- ☆51Updated 6 months ago
- A napari plugin to view and edit metadata☆12Updated 2 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆54Updated this week
- StarDist plugin for napari☆39Updated last year