fractal-analytics-platform / fractal-tasks-core
Main tasks for the Fractal analytics platform
☆14Updated this week
Related projects ⓘ
Alternatives and complementary repositories for fractal-tasks-core
- A napari plugin to view and edit metadata☆10Updated last year
- A napari plugin for zarr backed OME-NGFF images☆28Updated 3 weeks ago
- ☆21Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- A 3D interactivity toolbox for napari☆32Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last month
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆12Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆15Updated this week
- Command-line client for Fractal☆45Updated this week
- Paint segmentations directly to on-disk/remote zarr arrays☆14Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated 3 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆23Updated this week
- Napari gaming☆16Updated 2 years ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆21Updated this week
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated this week
- ☆10Updated 3 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆53Updated 3 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆28Updated this week
- Optimize image processing workflows in napari☆17Updated 2 years ago
- ☆13Updated 4 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆19Updated 2 weeks ago
- Process and analyze surfaces using vedo in napari.☆22Updated 6 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Control, reconstruction, and analysis code for oblique plane microscopy.☆21Updated 3 months ago
- napari plugin for trackastra☆12Updated 3 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- Multiple file format reading directly into napari using pure Python☆33Updated 4 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆23Updated last month