Alternatives and similar repositories for fractal-tasks-core

Users that are interested in fractal-tasks-core are comparing it to the libraries listed below

• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 2 weeks ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆23Updated last week
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆31Updated last month
• fractal-analytics-platform / ngio
  NGIO is a Python library to streamline OME-Zarr image analysis workflows.
  ☆14Updated this week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated last week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆37Updated this week
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 9 months ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated last week
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆22Updated 2 months ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆14Updated 3 weeks ago
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆11Updated 5 months ago
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆14Updated last week
• haesleinhuepf / napari-workflow-optimizer
  Optimize image processing workflows in napari
  ☆17Updated 2 weeks ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆44Updated last week
• CamachoDejay / teaching-bioimage-analysis-python
  A place to collect information used in lectures, demos, workshops, etc.
  ☆17Updated 7 months ago
• ome-zarr-models / ome-zarr-models-py
  A minimal Python package for reading OME-Zarr (meta)data
  ☆25Updated last week
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• NL-BioImaging / biomero
  BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
  ☆16Updated last month
• multiview-stitcher / napari-stitcher
  A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher
  ☆16Updated last month
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 2 months ago
• haesleinhuepf / devbio-napari
  ☆49Updated 2 weeks ago
• guiwitz / napari-serialcellpose
  ☆15Updated 2 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆35Updated last week
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆37Updated last week
• haesleinhuepf / napari-assistant
  ☆24Updated 2 weeks ago
• andy-sweet / napari-metadata
  A napari plugin to view and edit metadata
  ☆10Updated last year
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated 2 years ago
• Kapoorlabs-CAPED / NapaTrackMater
  Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.
  ☆16Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated 3 weeks ago