fractal-analytics-platform / fractal-tasks-coreLinks
Main tasks for the Fractal analytics platform
☆16Updated this week
Alternatives and similar repositories for fractal-tasks-core
Users that are interested in fractal-tasks-core are comparing it to the libraries listed below
Sorting:
- ☆23Updated 3 weeks ago
- Command-line client for Fractal☆46Updated last week
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated last week
- A napari plugin to view and edit metadata☆10Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- GIve easy, high-level access to ome-zarr fileset☆16Updated 2 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- Optimize image processing workflows in napari☆17Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 8 months ago
- ☆15Updated 2 years ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last week
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆14Updated last week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Browse your OMERO database from within napari.☆37Updated this week
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated 2 months ago
- A 3D interactivity toolbox for napari☆34Updated last month
- dask empowered fast4dreg☆11Updated 6 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago