Alternatives and similar repositories for Scasat

Users that are interested in Scasat are comparing it to the libraries listed below

• nghiavtr / SCmut
  ☆34Updated 6 years ago
• dbrg77 / plate_scATAC-seq
  A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method
  ☆43Updated 4 years ago
• satijalab / Integration2019
  ☆17Updated 6 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆31Updated last year
• pachterlab / NYMP_2018
  ☆28Updated 7 years ago
• dpeerlab / Harmony
  Harmony framework for connecting scRNA-seq data from discrete time points
  ☆53Updated 2 months ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• SUwonglab / scABC
  ☆21Updated 6 years ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 3 years ago
• YeoLab / singlecell_pnm
  Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…
  ☆20Updated 8 years ago
• JiekaiLab / SOT
  Single-cell Orientation Tracing
  ☆22Updated 4 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆76Updated 2 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆51Updated 7 years ago
• tinglab / reCAT
  ☆20Updated 6 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• r3fang / snATAC
  <<------ Use SnapATAC!!
  ☆26Updated 6 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 6 years ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• vanheeringen-lab / scepia
  Single Cell Epigenome-based Inference of Activity
  ☆19Updated 2 years ago
• MarioniLab / MNN2017
  Code for the MNN manuscript figures
  ☆49Updated 7 years ago
• shendurelab / mouse-atac
  Repo for website and other code for mouse sci-ATAC-seq project
  ☆29Updated 5 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated 2 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆46Updated 9 years ago
• gofflab / developing_mouse_retina_scRNASeq
  10x single cell RNA-seq data from the developing mouse retina
  ☆16Updated 4 years ago