wagnerde / STITCH
Assembles a graph manifold from time series single-cell RNAseq data
☆16Updated 3 years ago
Alternatives and similar repositories for STITCH:
Users that are interested in STITCH are comparing it to the libraries listed below
- A study to compare methods for clustering of scRNA-seq data☆42Updated 5 months ago
- ☆28Updated last year
- Fast motif matching in R☆44Updated 11 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆37Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆75Updated last year
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- scRNAseq integration with triplet neural networks☆39Updated 2 years ago
- ☆19Updated 5 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 3 months ago
- ACTIONet single-cell analysis framework☆37Updated 4 months ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- benchmark for single-cell RNA-seq imputation methods☆25Updated 10 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆54Updated 9 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆12Updated 4 years ago
- ☆25Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 9 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- ☆38Updated 4 years ago
- ☆34Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago