wagnerde / STITCH
Assembles a graph manifold from time series single-cell RNAseq data
☆17Updated 3 years ago
Alternatives and similar repositories for STITCH:
Users that are interested in STITCH are comparing it to the libraries listed below
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- ☆20Updated 5 years ago
- ☆28Updated 2 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Fast motif matching in R☆47Updated last year
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Parse ArchR arrow files to anndata h5ad☆13Updated last year
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 8 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 3 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ☆28Updated 6 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆26Updated last week
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ☆10Updated last year
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago