Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations
☆24Dec 17, 2021Updated 4 years ago
Alternatives and similar repositories for Cyclum
Users that are interested in Cyclum are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 9 months ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated 3 weeks ago
- An algorithm for mapping cell state transitions.☆28Mar 3, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Jun 26, 2018Updated 7 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Apr 4, 2026Updated 2 weeks ago
- BoostDiff - Inference of differential networks from gene expression data☆13Jan 11, 2024Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago
- ☆10Sep 20, 2022Updated 3 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆80Jul 20, 2025Updated 8 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆36May 14, 2020Updated 5 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Jan 10, 2024Updated 2 years ago
- Regulatory networks with Direct Information☆18Oct 14, 2019Updated 6 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 3 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 7 months ago
- Multi-study integration of cellular trajectories☆19Jun 1, 2020Updated 5 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆27May 12, 2020Updated 5 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- ☆20May 30, 2022Updated 3 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- ☆27Apr 1, 2025Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆22Jan 22, 2026Updated 2 months ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆23Oct 8, 2025Updated 6 months ago