hmatsu1226 / SCODELinks
SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
☆45Updated 5 years ago
Alternatives and similar repositories for SCODE
Users that are interested in SCODE are comparing it to the libraries listed below
Sorting:
- ☆58Updated last year
- Geometry-preserving random sampling☆89Updated 11 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago
- Population balance analysis☆44Updated 6 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- scNMT-seq gastrulation☆42Updated 2 years ago
- ☆56Updated 7 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆93Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 9 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Network Reverse Engineering through AP inference of Mutual Information☆86Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A docker image for single-cell analysis☆91Updated this week
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 3 months ago
- ☆34Updated 6 years ago
- Tools for single-cell data processing☆127Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Create cisTarget databases☆53Updated 3 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆53Updated last year
- ☆68Updated 4 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- Accurate and robust imputation of scRNA-seq data☆97Updated 6 years ago
- ☆42Updated 3 months ago