hmatsu1226 / SCODE
SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation
☆43Updated 5 years ago
Alternatives and similar repositories for SCODE:
Users that are interested in SCODE are comparing it to the libraries listed below
- Geometry-preserving random sampling☆78Updated 3 months ago
- ☆55Updated 6 years ago
- Population balance analysis☆44Updated 5 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 10 months ago
- Single cell omics biology annotations☆48Updated this week
- Imputation method for scRNA-seq based on low-rank approximation☆75Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆34Updated 4 months ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 7 months ago
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆20Updated last month
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆26Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- ☆56Updated 4 months ago
- Single-cell RNA-seq Gene Expression Recovery☆109Updated 2 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated 2 weeks ago
- ☆47Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 3 months ago
- Gene expression deconvolution using dampened weighted least squares☆21Updated 3 years ago
- ☆34Updated 8 months ago
- pseudobulking on an AnnData object☆28Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 4 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated 2 weeks ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- Create cisTarget databases☆44Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago