Alternatives and similar repositories for scUnifrac

Users that are interested in scUnifrac are comparing it to the libraries listed below

• single-cell-genetics / limix_qtl
  ☆20Updated 3 months ago
• caleblareau / BuenColors
  R package of colors for the Buenrostro Lab
  ☆85Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆60Updated 11 months ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆64Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• zhiyhu / scFT-paper
  Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…
  ☆13Updated 4 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆22Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 4 years ago
• cozygene / TCA
  ☆19Updated 4 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆24Updated 5 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆38Updated 2 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated 2 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆38Updated 6 years ago
• juliendelile / MouseSpinalCordAtlas
  Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…
  ☆23Updated 5 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated last year
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated 2 years ago
• aselewa / dropseqRunner
  Lightweight pipeline for processing droplet-based single-cell RNA-seq data
  ☆18Updated 5 years ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆22Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 2 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆35Updated 4 years ago
• YosefLab / ImpulseDE2
  ☆41Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated last week
• crazyhottommy / scATACutils
  R/Bioconductor package for working with 10x scATACseq data
  ☆42Updated last year
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 6 years ago