soedinglab / prosstt
PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
☆26Updated last year
Alternatives and similar repositories for prosstt:
Users that are interested in prosstt are comparing it to the libraries listed below
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- A python package for chromVAR☆27Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated 2 years ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- ☆26Updated last year
- ☆34Updated 8 months ago
- ☆21Updated 3 months ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 months ago
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆31Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last week
- ☆19Updated 2 years ago
- Information-based dimensionality reduction☆29Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆18Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆41Updated last year
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆20Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆24Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆25Updated 3 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆12Updated 3 years ago
- single-cell Nucleosome Methylation Transcription☆13Updated 6 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆47Updated 6 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆46Updated 6 months ago