bhattlab / bhattlab_workflowsLinks
Computational workflows for metagenomics tasks, by the Bhatt lab
☆47Updated 2 years ago
Alternatives and similar repositories for bhattlab_workflows
Users that are interested in bhattlab_workflows are comparing it to the libraries listed below
Sorting:
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 8 months ago
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- Pathoscope: Species identification and strain attribution with unassembled sequencing data☆58Updated 6 years ago
- gutSMASH☆55Updated 8 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated last month
- ☆41Updated 4 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 6 years ago
- A general metagenomics data mining system focus on robust microbiome research☆58Updated 11 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 7 months ago
- Metagenomics Workshop☆28Updated 8 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- ☆23Updated 7 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- ☆27Updated 5 years ago
- StrainFinder☆28Updated 7 years ago
- Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks☆25Updated last year
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 9 months ago
- Snakemake pipeline for simulating shotgun metagenomic samples☆23Updated 2 weeks ago