bhattlab / bhattlab_workflowsLinks
Computational workflows for metagenomics tasks, by the Bhatt lab
☆47Updated 2 years ago
Alternatives and similar repositories for bhattlab_workflows
Users that are interested in bhattlab_workflows are comparing it to the libraries listed below
Sorting:
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- ☆23Updated 6 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- SHallow shOtGUN profiler☆54Updated 3 years ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated 6 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- ☆32Updated 2 years ago
- Metagenomics Workshop☆28Updated 8 years ago
- ☆41Updated 4 years ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆29Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- gutSMASH☆53Updated 6 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- StrainFinder☆27Updated 6 years ago
- An R package designed for drawing gene arrow maps☆79Updated last week
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last week
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago