arumugamlab / msamtoolsLinks
Metagenomics-related extended functionalities to samtools
☆22Updated 2 years ago
Alternatives and similar repositories for msamtools
Users that are interested in msamtools are comparing it to the libraries listed below
Sorting:
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆81Updated 2 months ago
- An R package designed for drawing gene arrow maps☆95Updated 4 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆25Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 2 weeks ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆67Updated this week
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- ☆56Updated last week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Metagenomic Estimation of Dietary Intake and Content.☆38Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 5 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- ☆33Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- ☆63Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- ☆79Updated this week
- ☆66Updated last year
- ☆42Updated 4 years ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Updated 9 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago