Alternatives and similar repositories for CARNAC-LR

Users that are interested in CARNAC-LR are comparing it to the libraries listed below

• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• hsinnan75 / GSAlign
  GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
  ☆58Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated last week
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆37Updated last week
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆16Updated 7 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆27Updated 3 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated 7 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• cschin / Write_A_Genome_Assembler_With_IPython
  The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python
  ☆30Updated 7 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆13Updated 3 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆32Updated 10 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 3 months ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• yangao07 / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆33Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆68Updated 2 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆42Updated last month
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• broadinstitute / GATK-for-Microbes
  ☆29Updated 3 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• hasindu2008 / sigtk
  A simple toolkit for manipulating nanopore signal data
  ☆18Updated last year
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• nextgenusfs / redmask
  Genome assembly soft-masking using Red (REpeat Detector)
  ☆18Updated 6 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 5 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 2 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆25Updated 2 years ago