kamimrcht / CARNAC-LRLinks
☆15Updated 6 years ago
Alternatives and similar repositories for CARNAC-LR
Users that are interested in CARNAC-LR are comparing it to the libraries listed below
Sorting:
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 7 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- Metagenomics microbial abundance quantification☆28Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 4 months ago
- ☆19Updated last month
- Hitting associations with k-mers☆44Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- Linear-time de novo Long Read Assembler☆41Updated 2 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆20Updated 10 months ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Updated 9 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Python bindings for the TaxonKit library☆41Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- ☆25Updated 4 years ago