General procedure for making QIIME 2 compatible SILVA reference files
☆20Oct 3, 2024Updated last year
Alternatives and similar repositories for make_SILVA_db
Users that are interested in make_SILVA_db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆35Oct 26, 2020Updated 5 years ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 2 years ago
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- USDA Nutrition codes Tree☆11Feb 13, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- paprica - PAthway PRediction by phylogenetIC plAcement☆32Apr 16, 2024Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Apr 4, 2026Updated last week
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology☆25May 22, 2019Updated 6 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- A repository for the lessons and notebooks used for Binder tutorials☆16Oct 24, 2020Updated 5 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 8 years ago
- ☆14Jan 27, 2026Updated 2 months ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 4 years ago
- ☆12Jul 30, 2018Updated 7 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated 10 months ago
- Taxa Insertion by Parsimony☆15Jan 22, 2025Updated last year
- Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM…☆61Jun 11, 2022Updated 3 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 5 months ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Feb 27, 2024Updated 2 years ago
- A Port of SparCC by Yonatan Friedman to Python3☆17Feb 14, 2020Updated 6 years ago
- ☆57Apr 8, 2026Updated last week
- MiGA: Microbial Genomes Atlas☆33Mar 19, 2026Updated 3 weeks ago
- R and python scripts for correlation-based network analysis☆62May 17, 2020Updated 5 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- Phinch is a data visualization framework aimed at promoting novel explorations of large biological datasets (microbiomes, metagenomes, et…☆42May 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated 3 weeks ago
- StaG Metagenomic Workflow Collaboration☆28Aug 20, 2024Updated last year
- Remove lambda phage reads from a fastq file☆29Jan 16, 2023Updated 3 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 5 months ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year