mikerobeson / make_SILVA_dbLinks
General procedure for making QIIME 2 compatible SILVA reference files
☆20Updated last year
Alternatives and similar repositories for make_SILVA_db
Users that are interested in make_SILVA_db are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆48Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 3 weeks ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆94Updated 2 months ago
- ☆14Updated 8 years ago
- ☆56Updated last week
- Using ggtree to build phylogenetic trees☆50Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60Updated 2 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Updated 2 months ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆41Updated 3 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆68Updated 3 years ago
- ☆20Updated last year
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20Updated 8 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆68Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Calculate assocations between genes and traits☆29Updated 11 months ago
- ☆13Updated 8 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago