ErnakovichLab / dada2_ernakovichlabLinks
☆18Updated this week
Alternatives and similar repositories for dada2_ernakovichlab
Users that are interested in dada2_ernakovichlab are comparing it to the libraries listed below
Sorting:
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
 - Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
 - MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated 3 weeks ago
 - r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
 - MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
 - General procedure for making QIIME 2 compatible SILVA reference files☆20Updated last year
 - ☆50Updated 4 years ago
 - ☆58Updated last month
 - ☆54Updated 4 months ago
 - Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 5 years ago
 - Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆15Updated last month
 - Compare different differential abundance and expression methods☆52Updated 3 years ago
 - PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
 - The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
 - Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
 - scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
 - ☆17Updated 2 years ago
 - CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 months ago
 - Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 2 months ago
 - This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
 - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
 - An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
 - BEAV: Bacterial Element Annotation reVamped☆72Updated 2 months ago
 - Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
 - Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
 - AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆42Updated 3 weeks ago
 - MetaCompare☆19Updated last year
 - Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
 - Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
 - phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago