☆20Feb 28, 2026Updated this week
Alternatives and similar repositories for dada2_ernakovichlab
Users that are interested in dada2_ernakovichlab are comparing it to the libraries listed below
Sorting:
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- ☆13Feb 5, 2022Updated 4 years ago
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- Toolbox for comparative genomics of MAGs☆88Feb 24, 2026Updated last week
- Look Up Guild Information for Fungi in R☆23Mar 20, 2025Updated 11 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Feb 5, 2026Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆87Dec 27, 2024Updated last year
- Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples☆20Nov 23, 2024Updated last year
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated last month
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 4 months ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualiz…☆27Aug 28, 2023Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆25Jan 15, 2026Updated last month
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆26Nov 20, 2023Updated 2 years ago
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Oct 4, 2023Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆34Oct 26, 2020Updated 5 years ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Sep 20, 2024Updated last year
- hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis☆70Feb 9, 2025Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- Materials and presentations for the 2021 ISB Virtual Microbiome Series.☆27Mar 8, 2023Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Feb 26, 2026Updated last week
- ☆37Jan 13, 2022Updated 4 years ago
- ☆38Dec 6, 2023Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies☆38May 25, 2023Updated 2 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆14Feb 13, 2026Updated 3 weeks ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆50Sep 24, 2025Updated 5 months ago
- Feature Aggregate Depth Utility☆12Aug 20, 2024Updated last year
- ☆13Updated this week
- ☆13Jun 6, 2024Updated last year
- ☆10Feb 3, 2022Updated 4 years ago
- The Mobilome Ontology describes bacterial mobile genetic elements, their mechanisms, and associated epidemiology.☆10Oct 2, 2025Updated 5 months ago
- Visualization of nucleotide alignment algorithms 🧬 DNA sequence as input, best aligning match as output.☆13Aug 11, 2020Updated 5 years ago
- Microbiome Analysis Plotting and Visualization☆12Updated this week