ErnakovichLab / dada2_ernakovichlabLinks
☆17Updated this week
Alternatives and similar repositories for dada2_ernakovichlab
Users that are interested in dada2_ernakovichlab are comparing it to the libraries listed below
Sorting:
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- ☆56Updated 3 weeks ago
- ☆53Updated 2 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆43Updated last week
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆69Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- ☆49Updated 4 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated this week
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆39Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- GraftM - Rapid community profiles from metagenomes☆46Updated last year
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆68Updated last week
- MetaCompare☆19Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆48Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated this week
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last week
- A pipeline for the identification of fungi in public metagenomics datasets☆16Updated 4 years ago
- General procedure for making QIIME 2 compatible SILVA reference files☆20Updated 10 months ago